View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_high_20 (Length: 323)
Name: NF18500_high_20
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 40328947 - 40329232
Alignment:
| Q |
18 |
ctctcttgttcaatgcttcttctctgtctctcggtannnnnnncattgttcaggttcatagacgacccaacccacccgtggaacccgtccaatcgaagat |
117 |
Q |
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| T |
40328947 |
ctctcttgttcaatgcttcttcggtgtctctcggtatttttttcattgttcaggttcatagacgacccaacccacccgtggaacccgtccaaccaaagaa |
40329046 |
T |
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| Q |
118 |
cctgaacccgagcaaaccgagtacatgagtggtcgaatttgggtcttaagattgagtgatcggtttcatctggtatgcctctttcgggcttgaacccgtc |
217 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| || || |
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| T |
40329047 |
cccgaacccgagcaaaccgagtacatgagtggtcaaatttgggtcttaagattgaatgatcggtttcatctggtatgcctctttcgggcctgaatccatc |
40329146 |
T |
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| Q |
218 |
cgatgctctaccctactaaaacccactatacgtaaacacatacattctttacaattttggtaacaaacaagacatcaatacatatttt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40329147 |
cgatgctctaccctactaaaacccactatacgtaaacac--aaattctttacaattttggtaacaaacaagacatcaatacatatttt |
40329232 |
T |
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