View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_high_21 (Length: 317)
Name: NF18500_high_21
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 307
Target Start/End: Original strand, 2273973 - 2274260
Alignment:
| Q |
20 |
gatagcaccagaatgtataagattaccatggtgttttcgttgttgtttttgagagggttagggttaggattagggacacgatgtagtgtacttccaatat |
119 |
Q |
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| T |
2273973 |
gatagcaccagaatgtataagattaccatggtgttttcgttgttgtttttgagagggttagggttagggttagggacacgatgtagtgtacttccaatat |
2274072 |
T |
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| Q |
120 |
taagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgttatgttgtaccatgaatttaccaaaatatgatgatatattcat |
219 |
Q |
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| T |
2274073 |
taagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgttatgttgtaccataaatttaccaaaatatgatgatatattcat |
2274172 |
T |
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| Q |
220 |
tgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctcttaaacctctgatgatctttgtcgatgtctctg |
307 |
Q |
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| T |
2274173 |
tgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctcttaaacctctgatgatctttgtcgatgtctctg |
2274260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 2272412 - 2272701
Alignment:
| Q |
20 |
gatagcaccagaatgtataagattaccatggtgttttc---gttgttgtttttgagagggttagggttaggattagggacacgatgtagtgtacttccaa |
116 |
Q |
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| T |
2272412 |
gatagcagcagaatgtataagattaccatggtgttgttattgttgttgtttttgtgagggttagggttagggttagggacacgatgtagtgtacttccaa |
2272511 |
T |
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| Q |
117 |
tattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgttatgttgtaccatgaatttaccaaaatatgatgatatatt |
216 |
Q |
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| T |
2272512 |
tattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatgttatgttgtaccatgaatttaccaaaatatgatgatatatt |
2272611 |
T |
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| Q |
217 |
cattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctcttaaacctctgatgatctttgtcgatgtctct |
306 |
Q |
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| T |
2272612 |
cattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctcttaaacctctgatgatctttgtcgatgtctct |
2272701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 76 - 284
Target Start/End: Complemental strand, 373536 - 373328
Alignment:
| Q |
76 |
gttagggttaggattagggacacgatgtagtgtacttccaatattaagtgctatttgaaaaatcgaaacaacagcaaggactatgagcatcacagcaatg |
175 |
Q |
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| T |
373536 |
gttagggttagggtttgggacacgatgtagtgtcctaccataaccaagtgctatttgaaataagaaaacaacagcaatgagtatgagcatcacagcagtg |
373437 |
T |
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| Q |
176 |
ttatgttgtaccatgaatttaccaaaatatgatgatatattcattgcagcaaacataatcaatgccaagaataaattcatcgtgatcacaacaactctct |
275 |
Q |
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| T |
373436 |
tcatgttccgccatgaatttcccaaaatatgatgacatattcattgcaccgatcataatcaataccaaggataaactcattgtagtcacaactattttct |
373337 |
T |
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| Q |
276 |
taaacctct |
284 |
Q |
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||||||||| |
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| T |
373336 |
taaacctct |
373328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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