View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_high_34 (Length: 237)
Name: NF18500_high_34
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43654660 - 43654443
Alignment:
| Q |
1 |
tctccttatcatccatccgctgatccacacacagtcgatctaataagagaacaaagaatattcttataaaaaacttttatnnnnnnnncaataaacaaca |
100 |
Q |
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| T |
43654660 |
tctccttatcatccatacgctgatccacacatagtcgatctaataagagaacaaagaatattcttataaaaaacttttataaaaaaa-caataaacaaca |
43654562 |
T |
|
| Q |
101 |
atgataattcactcatgaatccatgatagttcaatatgctgtagctggggcctgtattcttctgatgnnnnnnnttgagaaatttttataataataatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
43654561 |
atgataattcactcatgaatccatgatagttcaatatgctgtagct--ggcctatattcttctgatgaaaaaaattgagaaatttttataataataatca |
43654464 |
T |
|
| Q |
201 |
taataacaacaataacatcac |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
43654463 |
taataacaacaataacatcac |
43654443 |
T |
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