View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18500_high_6 (Length: 453)
Name: NF18500_high_6
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_high_6 |
 | |
|
| [»] chr3 (29 HSPs) |
| |
|
| [»] scaffold1439 (2 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 12 - 453
Target Start/End: Original strand, 22614993 - 22615434
Alignment:
| Q |
12 |
atcatcataactcaaacttaaaatctctttaatcccaattaaattggaatccttgtttagctctaggagtagattttcacaaaacctcttccactcgatt |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22614993 |
atcattataactcaaacttaaaatctctttaatcccaattaaattggaatccttgtttagctctaagagtagattttcacaaaacctcttccactcgatt |
22615092 |
T |
|
| Q |
112 |
gaatttttatctcttaaagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22615093 |
gaatttttatctcttaaagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagct |
22615192 |
T |
|
| Q |
212 |
cttttggacaacaacatttgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22615193 |
cttttggacaacaacatttgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgactaa |
22615292 |
T |
|
| Q |
312 |
cgaagatctcttacaagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22615293 |
cgaagatctcttacaagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattc |
22615392 |
T |
|
| Q |
412 |
caaaaatgcatgttccatacatcatcaaacacaacaacgtac |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22615393 |
caaaaatgcatgttccatacatcatcaaacacaacaacgtac |
22615434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 12 - 449
Target Start/End: Complemental strand, 21931165 - 21930725
Alignment:
| Q |
12 |
atcatcataactcaaacttaaaatctctttaatcccaattaaattggaatccttgtttagctctaggagtagattttcacaaaacctcttccactcgatt |
111 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||||||| || ||||| | |||||||||| ||||||||| | ||| | || |||||| | |
|
|
| T |
21931165 |
atcatcataacttaaacttaaaatttcttttatcccaattagatgtgaatctgtctttagctctaaatttagattttctctaaatcgctgccactcaaac |
21931066 |
T |
|
| Q |
112 |
gaatttttatctcttaaagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagct |
211 |
Q |
| |
|
|||||| |||||| ||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| |||| || | || ||||||||| |
|
|
| T |
21931065 |
acatttttctctcttgtagataaaagtccaccgatggcaacaattgctagcggtaaaccattgcattttttaacaatttcattagttgtaccaatgagct |
21930966 |
T |
|
| Q |
212 |
cttttggacaacaac-at--ttgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgac |
308 |
Q |
| |
|
|| |||||||||| | || | |||||||| |||||||||||||| |||||||||| ||||||||| | ||||||||||||||||||| ||| || | |
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|
| T |
21930965 |
ctgttggacaacacccatcatagtcaaatttgaatgccttcttattgaacaactccaaagattgttcatgagttaaaggttgcaactcaagcatttcaat |
21930866 |
T |
|
| Q |
309 |
aagcgaagatctcttacaagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctca |
408 |
Q |
| |
|
| |||||| | |||||||| | ||||||| || |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||| |
|
|
| T |
21930865 |
gaaagaagattttttacaagacaccacaacatccatgttccttgttgttataaatatcttacttccatttttactatcaattgcagcaaattcaatatca |
21930766 |
T |
|
| Q |
409 |
ttccaaaaatgcatgttccatacatcatcaaacacaacaac |
449 |
Q |
| |
|
| ||||||||| | ||||| |||||||||||||| ||||| |
|
|
| T |
21930765 |
tcccaaaaatgtacattccaaacatcatcaaacacgacaac |
21930725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 133 - 446
Target Start/End: Original strand, 30989148 - 30989464
Alignment:
| Q |
133 |
aaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaacaacat---t |
229 |
Q |
| |
|
||||| ||||| ||||||||||||||||| |||||||| || |||||||||||||| ||||||| |||| |||||||||| ||||||||||||| | |
|
|
| T |
30989148 |
aaaagtcctccaatggcaacaattgctagcggtaaaccgttacattttttaacaatttcataagctataccaatgagctcctttggacaacaaccaccat |
30989247 |
T |
|
| Q |
230 |
tgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttacaaga |
329 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||| |||||| | | |||||| | |||||||| |
|
|
| T |
30989248 |
ggtcaaatctgaatgccttcttattgaacaactccaaagattgttgttcatttaaaggttgcaactcaagcacttcaatataagaagattttttacaaga |
30989347 |
T |
|
| Q |
330 |
aagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccat |
429 |
Q |
| |
|
| ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| | |||| |
|
|
| T |
30989348 |
caacacaacatctaggtttcttgttgtgataaatatcttacttccatttttattatcaattacagcaaattcaatatcatcccaaaaatgtacactccaa |
30989447 |
T |
|
| Q |
430 |
acatcatcaaacacaac |
446 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30989448 |
acatcatcaaacacaac |
30989464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 114 - 453
Target Start/End: Complemental strand, 22115727 - 22115385
Alignment:
| Q |
114 |
atttttatctcttaaagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctct |
213 |
Q |
| |
|
|||||| |||||| ||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| |||| || |||| ||||||||||| |
|
|
| T |
22115727 |
atttttctctcttgtagataaaagtccaccgatggcaacaattgctagcggtaaacccttgcattttttaacaatttcattagctataccaatgagctct |
22115628 |
T |
|
| Q |
214 |
tttggacaacaacat---ttgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaa |
310 |
Q |
| |
|
|| |||||| | | | | |||||||| |||||||||||||| ||||||| || |||||||||| |||||||||||||| || | |||| | | | |
|
|
| T |
22115627 |
ttgggacaagaccctccgtagtcaaatttgaatgccttcttattgaacaacttcaatgattgttcttgagttaaaggttgcagctaaagcacctcaatga |
22115528 |
T |
|
| Q |
311 |
gcgaagatctcttacaagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcatt |
410 |
Q |
| |
|
|||||| | |||||||| | ||||||| || || ||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| |||| |
|
|
| T |
22115527 |
aagaagattttttacaagacaacacaacatccatgtttcttgttgttataaatatcttacttccatttttactatcaattacagaaaattcaatatcatc |
22115428 |
T |
|
| Q |
411 |
ccaaaaatgcatgttccatacatcatcaaacacaacaacgtac |
453 |
Q |
| |
|
||||||||| | ||||| |||||||||||||| ||||||||| |
|
|
| T |
22115427 |
ccaaaaatgtacattccaaacatcatcaaacacgacaacgtac |
22115385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 129 - 445
Target Start/End: Original strand, 22656905 - 22657224
Alignment:
| Q |
129 |
agataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaacaacat |
228 |
Q |
| |
|
||||||||| || || || || |||||||| || |||||||||||||||||| || |||| || ||||||||||||||||||||||||||||||| | |
|
|
| T |
22656905 |
agataaaaggccgccaatagccacaattgccagcggtaaacctttgcattttctagcaatttcggaagatatatcaatgagctcttttggacaacatcca |
22657004 |
T |
|
| Q |
229 |
tt---gtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttac |
325 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||| | |||||||||| | |||||||| || | |||||||||| | || |||||| |||||| |
|
|
| T |
22657005 |
ttaaagtcaaattgaaaggccttcttattaaacaactcaaaagattgttctactgttaaaggatgtagttcatgcacttcaataaaagaagatttcttac |
22657104 |
T |
|
| Q |
326 |
aagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgtt |
425 |
Q |
| |
|
|| | | |||||||| ||||| |||||||| |||||||||||||| |||||||||| |||| |||||| |||||||||||| ||||||| |||| |
|
|
| T |
22657105 |
aatacaccgcaacatccatatttcttgttgtaataaatatcttactcccatttttatgatcaccaacagcatattcaatctcatcccaaaaacttttgtt |
22657204 |
T |
|
| Q |
426 |
ccatacatcatcaaacacaa |
445 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
22657205 |
ccatacatcatcaaacacaa |
22657224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 12 - 453
Target Start/End: Complemental strand, 22035261 - 22034817
Alignment:
| Q |
12 |
atcatcataactcaaacttaaaatctctttaatcccaattaaattggaatccttgtttagctctaggagtagattttcacaaaacctcttccactcgatt |
111 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||||||| || | ||| | |||||||||| || |||||| | ||| |||| |||||| | |
|
|
| T |
22035261 |
atcatcataacttaaacttaaaatttcttttatcccaattagatgtgtatctgtctttagctctaaatttaaattttctctaaatctctgccactcaaac |
22035162 |
T |
|
| Q |
112 |
gaatttttatctcttaaagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagct |
211 |
Q |
| |
|
|||||| |||||| ||||||||| || || || ||||||||||||||||| ||||| || || ||||||||||| |||| || |||| ||||||||| |
|
|
| T |
22035161 |
acatttttctctcttgtagataaaagtccaccaatagcaacaattgctagtggcaaaccctttcactttttaacaatttcattagctataccaatgagct |
22035062 |
T |
|
| Q |
212 |
cttttggacaacaacat---ttgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgac |
308 |
Q |
| |
|
|||| |||||| | | | | |||||||| |||||||||||||| ||||||| || |||||||||| |||||||||||||| |||| |||| | | |
|
|
| T |
22035061 |
ctttgggacaagaccctccgtagtcaaatttgaatgccttcttattgaacaacttcaatgattgttcttgagttaaaggttgcagctcaagcacctcaat |
22034962 |
T |
|
| Q |
309 |
aagcgaagatctcttacaagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctca |
408 |
Q |
| |
|
| |||||| | |||||||| | ||||||| || || ||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| ||| |
|
|
| T |
22034961 |
gaaagaagattttttacaagacaacacaacatccatgtttcttgttgttataaatatcttacttccatttttactatcaattacagaaaattcaatatca |
22034862 |
T |
|
| Q |
409 |
ttccaaaaatgcatgttccatacatcatcaaacacaacaacgtac |
453 |
Q |
| |
|
| ||||||||| | ||||| ||||||||||| ||||||| |||| |
|
|
| T |
22034861 |
tcccaaaaatgtacattccaaacatcatcaaagacaacaaggtac |
22034817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 12 - 453
Target Start/End: Complemental strand, 21937897 - 21937453
Alignment:
| Q |
12 |
atcatcataactcaaacttaaaatctctttaatcccaattaaattggaatccttgtttagctctaggagtagattttcacaaaacctcttccactcgatt |
111 |
Q |
| |
|
|||||||||||| ||||||||||| || || |||||||||| || | || | |||| ||||| ||||||||| | ||| ||||||||||| | |
|
|
| T |
21937897 |
atcatcataacttaaacttaaaatttcatttatcccaattagatgtgtatttctctttaactctaaatttagattttctctaaatctcttccactcaaac |
21937798 |
T |
|
| Q |
112 |
gaatttttatctcttaaagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagct |
211 |
Q |
| |
|
|||||| |||||| ||||||||| || |||||||||||||||||||| |||||||| ||||||||||| ||||| |||| ||||||| || | |||| |
|
|
| T |
21937797 |
acatttttctctcttgtagataaaaggccaccgatggcaacaattgctagcggtaaaccattgcatttttttacaatttcattagatataccatttagct |
21937698 |
T |
|
| Q |
212 |
cttttggacaaca-acat--ttgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgac |
308 |
Q |
| |
|
||||||||||||| ||| | |||||||| |||||||||||||| |||||||||| ||||||||| | ||||||| |||||||||| | |||| | |
|
|
| T |
21937697 |
cttttggacaacacccatcatagtcaaatttgaatgccttcttattgaacaactccaaagattgttcatgagttaaacattgcaactcaagaacttcaat |
21937598 |
T |
|
| Q |
309 |
aagcgaagatctcttacaagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctca |
408 |
Q |
| |
|
| |||||| | |||||||| | ||||||| || |||||||||||||||||||| |||||||||||||| |||||||| ||||| |||| || ||| |
|
|
| T |
21937597 |
gaaagaagattttttacaagacaccacaacatcaattatccttgttgttataaatatcctacttccatttttactatcaattccagcaaattcgatatca |
21937498 |
T |
|
| Q |
409 |
ttccaaaaatgcatgttccatacatcatcaaacacaacaacgtac |
453 |
Q |
| |
|
| ||||||||| | |||| |||||||||||||| | ||||||| |
|
|
| T |
21937497 |
tcccaaaaatgtagactccaaacatcatcaaacacgataacgtac |
21937453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 115 - 417
Target Start/End: Complemental strand, 22180058 - 22179753
Alignment:
| Q |
115 |
tttttatctcttaaagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctctt |
214 |
Q |
| |
|
||||| |||||| ||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| |||| || |||| |||||| ||||| |
|
|
| T |
22180058 |
tttttctctcttgtagataaaagtccaccgatggcaacaattgctagcggtaaaccattgcattttttaacaatttcattagctataccaatgacctctt |
22179959 |
T |
|
| Q |
215 |
ttggacaacaac---atttgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaag |
311 |
Q |
| |
|
|| || |||| | |||||||||| |||||||||||||| |||||||||| ||| ||||| |||||||| |||||||||| |||| | | | |
|
|
| T |
22179958 |
tttgaaaacacccgtcattgtcaaatttgaatgccttcttattgaacaactccaaagactgttcaggagttaaagtttgcaactcaagcacctcaatgaa |
22179859 |
T |
|
| Q |
312 |
cgaagatctcttacaagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattc |
411 |
Q |
| |
|
|||||| | ||||| || | |||||||| || |||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||| | |
|
|
| T |
22179858 |
agaagattttttacaggacaccgcaacatccatgttccttgttgttattaatatcttacttccatttttactatcaattgcagcagattcaacatcatcc |
22179759 |
T |
|
| Q |
412 |
caaaaa |
417 |
Q |
| |
|
|||||| |
|
|
| T |
22179758 |
caaaaa |
22179753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 129 - 445
Target Start/End: Original strand, 22620753 - 22621072
Alignment:
| Q |
129 |
agataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaacaacat |
228 |
Q |
| |
|
|||||||||||| || | ||| |||||||||||||||||||| ||||||||| || |||| || ||||||||||||| || ||||||||||||| | |
|
|
| T |
22620753 |
agataaaagaccaccaacggctacaattgctagtggtaaacccttgcattttctagcaatttcggaagatatatcaattagatcttttggacaacttcca |
22620852 |
T |
|
| Q |
229 |
tt---gtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttac |
325 |
Q |
| |
|
| ||||||| ||||| |||||||||| |||||||| | ||||||||| |||||||||||||| | |||||||| | | || |||||| | |||| |
|
|
| T |
22620853 |
tcaaagtcaaatcgaaataccttcttattgaacaactcaaaagattgttcctcagttaaaggttgtagttcatgcacctcaataaaagaagattttttac |
22620952 |
T |
|
| Q |
326 |
aagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgtt |
425 |
Q |
| |
|
|| ||| |||||||| ||| | |||||||| || ||||||||||| ||||||||||||||||| ||| || || || ||||||||||||| ||| | |
|
|
| T |
22620953 |
aataaatagcaacatccatacttcttgttgtaatcaatatcttactcccatttttattatcaatcacaacatgctctatttcattccaaaaatctatggt |
22621052 |
T |
|
| Q |
426 |
ccatacatcatcaaacacaa |
445 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
22621053 |
ccatacatcatcaaatacaa |
22621072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 129 - 448
Target Start/End: Complemental strand, 22053357 - 22053038
Alignment:
| Q |
129 |
agataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaacaacat |
228 |
Q |
| |
|
||||||||| || |||||||||||| ||||||| |||||||| ||||||||||||||||| |||| ||||||| ||| |||||||||||| ||||| | |
|
|
| T |
22053357 |
agataaaagtccaccgatggcaacatttgctagcggtaaaccattgcattttttaacaatttcattagatataccaacgagctcttttgggcaacaccca |
22053258 |
T |
|
| Q |
229 |
ttgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgc-actttgacaagcgaagatctcttacaa |
327 |
Q |
| |
|
| |||||||| ||||||||||| || |||||||||| ||||||||| | ||||||| |||||| ||| || || | || || ||| | | |||| |
|
|
| T |
22053257 |
tggtcaaatttgaatgccttcttgttgaacaactccaaagattgttcatgagttaaacattgcaaatcaagcttctcagtgaa-agatgatttttcacaa |
22053159 |
T |
|
| Q |
328 |
gaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttcc |
427 |
Q |
| |
|
|| | |||||||| || |||||||||||||||||||| | |||||||||||| |||||||| ||||| ||||||| |||| ||||||||| |||| |
|
|
| T |
22053158 |
gacaccgcaacatccattatccttgttgttataaatatcctgcttccatttttactatcaattgcagcaaattcaatatcatgccaaaaatgttcattcc |
22053059 |
T |
|
| Q |
428 |
atacatcatcaaacacaacaa |
448 |
Q |
| |
|
| ||||||||||| ||||||| |
|
|
| T |
22053058 |
aaacatcatcaaatacaacaa |
22053038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 136 - 415
Target Start/End: Original strand, 22648030 - 22648312
Alignment:
| Q |
136 |
agacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaaca-acat--ttgt |
232 |
Q |
| |
|
||||| || |||||||||||||| || |||||||| ||||||||| || ||| ||| |||||||||||||||| |||||||||||||| ||| |||| |
|
|
| T |
22648030 |
agaccaccaatggcaacaattgccagcggtaaacccttgcattttctagaaatttcaaaagatatatcaatgagttcttttggacaacatccattgttgt |
22648129 |
T |
|
| Q |
233 |
caaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttacaagaaag |
332 |
Q |
| |
|
|||| ||||||| |||||| || |||||||| | ||||||||| | |||||||||||||| |||| ||||| | | |||||| |||||||| | | |
|
|
| T |
22648130 |
caaactgaaatgtcttcttgttgaacaactcaaaagattgttcatttgttaaaggttgcaattcatacacttcaatgaaagaagatttcttacaatatat |
22648229 |
T |
|
| Q |
333 |
tgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaa |
415 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| | ||| ||||||||||| ||||| |
|
|
| T |
22648230 |
ggcaacatccatatttcttgttgtaataaatatcttactcccatttttattatcaatcaatgcattttcaatctcatcccaaa |
22648312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 114 - 417
Target Start/End: Complemental strand, 22187630 - 22187324
Alignment:
| Q |
114 |
atttttatctcttaaagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctct |
213 |
Q |
| |
|
|||||| |||||| ||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||| |||| || |||| |||||||||| |
|
|
| T |
22187630 |
atttttctctcttgtagataaaaggccaccgatggcaacaattgctagcggtaaaccactgcattttttaacaatttcatcagctataccaatgagctcg |
22187531 |
T |
|
| Q |
214 |
tttggacaacaacatt---tgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaa |
310 |
Q |
| |
|
||||||||||| | | |||| || |||||||||||||| |||||||||| |||||||||| || ||||||||||| |||||||| | | || |
|
|
| T |
22187530 |
tttggacaacacccatcacaatcaattttgaatgccttcttattgaacaactccaaagattgttctagagataaaggttgcagttcatgcacctcaataa |
22187431 |
T |
|
| Q |
311 |
gcgaaga-tctcttacaagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcat |
409 |
Q |
| |
|
||||| ||| |||||||| | |||||| | ||||||||||||||||||||| |||||||||||||| ||||||| || || ||| ||| |||| |
|
|
| T |
22187430 |
aagaagactct-ttacaagacaccacaacattctttttccttgttgttataaatatcctacttccatttttacaatcaattgcaacatatttaatatcat |
22187332 |
T |
|
| Q |
410 |
tccaaaaa |
417 |
Q |
| |
|
|||||||| |
|
|
| T |
22187331 |
tccaaaaa |
22187324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 449
Target Start/End: Complemental strand, 21946368 - 21945928
Alignment:
| Q |
12 |
atcatcataactcaaacttaaaatctctttaatcccaattaaattggaatccttgtttagctctaggagtagattttcacaaaacctcttccactcgatt |
111 |
Q |
| |
|
|||||||||||| |||||||||| ||||| |||||||||| || | ||| | |||||||||| ||||||||| | ||| |||| |||||| |
|
|
| T |
21946368 |
atcatcataacttaaacttaaaacttcttttatcccaattagatctgtatctgtctttagctctaaatttagattttctctaaatctctgccactcagac |
21946269 |
T |
|
| Q |
112 |
gaatttttatctcttaaagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagct |
211 |
Q |
| |
|
||||||| ||||| ||||||||| || ||||| ||| ||||||||| |||||||| || |||||||| ||||| |||| || |||| |||| |||| |
|
|
| T |
21946268 |
aaatttttctctctcgtagataaaaggccaccgatagcagcaattgctaacggtaaaccattccatttttttacaatttcattagctataccaattagct |
21946169 |
T |
|
| Q |
212 |
cttttggacaaca---acatttgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgca-ctttga |
307 |
Q |
| |
|
| |||||| |||| || | |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| |||| || || | |
|
|
| T |
21946168 |
catttggataacacccaccatagtcaaatttaaatgccttcttattaaacaactccaaagattgttcttgagttaaacattgcagctcaaacatctcagt |
21946069 |
T |
|
| Q |
308 |
caagcgaagatctcttacaagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctc |
407 |
Q |
| |
|
|| |||||| | ||||||||| |||||| | ||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||| || || |
|
|
| T |
21946068 |
gaaa-gaagattttttacaagaattcacaacattcttgttccttgttgttataaatatcctacttccatttttactatcaattgcagcaaatttaaaatc |
21945970 |
T |
|
| Q |
408 |
attccaaaaatgcatgttccatacatcatcaaacacaacaac |
449 |
Q |
| |
|
|| ||||||||| | |||| ||||||||||| || ||||| |
|
|
| T |
21945969 |
atcccaaaaatgtacagtccaaacatcatcaaagacgacaac |
21945928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 114 - 417
Target Start/End: Complemental strand, 22028642 - 22028336
Alignment:
| Q |
114 |
atttttatctcttaaagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctct |
213 |
Q |
| |
|
|||||| |||||| ||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||| |||| || |||| |||||||||| |
|
|
| T |
22028642 |
atttttctctcttgtagataaaaggccaccgatggcaacaattgctagcggtaaaccactgcattttttaacaatttcatcagctataccaatgagctcg |
22028543 |
T |
|
| Q |
214 |
tttggacaacaacatt---tgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaa |
310 |
Q |
| |
|
||||||||||| | | |||| || |||| |||||||| |||||||||| |||||||||| || ||||||||||| |||||||| | | || |
|
|
| T |
22028542 |
tttggacaacacccatcacaatcaattttgaatgaattcttattgaacaactccaaagattgttctagagataaaggttgcagttcatgcacctcaataa |
22028443 |
T |
|
| Q |
311 |
gcgaaga-tctcttacaagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcat |
409 |
Q |
| |
|
||||| ||| |||||||| | |||||| | ||||||||||||||||||||| |||||||||||||| ||||||| || || ||| ||| |||| |
|
|
| T |
22028442 |
aagaagactct-ttacaagacaccacaacattctttttccttgttgttataaatatcctacttccatttttacaatcaattgcaacatatttaatatcat |
22028344 |
T |
|
| Q |
410 |
tccaaaaa |
417 |
Q |
| |
|
|||||||| |
|
|
| T |
22028343 |
tccaaaaa |
22028336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 114 - 449
Target Start/End: Original strand, 18966811 - 18967149
Alignment:
| Q |
114 |
atttttatctcttaaagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctct |
213 |
Q |
| |
|
|||||| |||| | |||| ||||| || || |||| |||||| || ||||||||||| ||||||||||||||| |||| || ||| |||| || || |
|
|
| T |
18966811 |
atttttctctcgtgaagacaaaagtccacccatggaaacaatagcaagtggtaaaccgaggcattttttaacaatttcattagttatgacaatcagatca |
18966910 |
T |
|
| Q |
214 |
tttggacaaca---acatttgtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaa |
310 |
Q |
| |
|
||||||||||| || | ||||||| || | ||||||||| |||||||| | |||||||||||| |||||||||||||||||| | || | | |
|
|
| T |
18966911 |
tttggacaacacccactatgttcaaatttgaacgtcttcttattgaacaactctatagattgttcttcggttaaaggttgcaactcaagtacctcagtga |
18967010 |
T |
|
| Q |
311 |
gcgaagatctcttacaagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcatt |
410 |
Q |
| |
|
|||| || |||||||| | ||||||| | |||||||||||||| ||||| |||||||| |||||||||||||||||| || ||||||| |||| |
|
|
| T |
18967011 |
aataagaccttttacaagagacaacaacatccaggttccttgttgttatcaatatgttacttccttttttattatcaattacaacaaattcaatatcatc |
18967110 |
T |
|
| Q |
411 |
ccaaaaatgcatgttccatacatcatcaaacacaacaac |
449 |
Q |
| |
|
||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
18967111 |
ccaaaaatgtaaactccaaacatcatcaaacacaacaac |
18967149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 224
Target Start/End: Complemental strand, 22105335 - 22105240
Alignment:
| Q |
129 |
agataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaaca |
224 |
Q |
| |
|
||||||||| || || ||||||||||||||||| |||||||| ||||||||||||||||| |||| || |||| |||||||||||||||||||||| |
|
|
| T |
22105335 |
agataaaaggccacctatggcaacaattgctagcggtaaaccattgcattttttaacaatgtcattagctataccaatgagctcttttggacaaca |
22105240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 128 - 453
Target Start/End: Original strand, 22436475 - 22436800
Alignment:
| Q |
128 |
aagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaacaaca |
227 |
Q |
| |
|
||||||||||||| || || | ||||||||||| ||||| |||||||||||||||||||| | ||||||||||||| || | || ||||||||| | |
|
|
| T |
22436475 |
aagataaaagaccaccagtgactacaattgctagaggtaatcctttgcattttttaacaattttggaagatatatcaataagattttgtggacaacatcc |
22436574 |
T |
|
| Q |
228 |
tttgtcaaatt--gaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttac |
325 |
Q |
| |
|
| ||| || | |||||||||||||| ||||| || | ||||| ||||||||||||| ||| | ||||| |||| |||| |||||||||||| |
|
|
| T |
22436575 |
act--caagttatggaatgccttcttattgaacaattctaaagatttttcttcagttaaaccttgaagttcatgtacttcaacaaaagaagatctcttaa |
22436672 |
T |
|
| Q |
326 |
aagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgtt |
425 |
Q |
| |
|
||||| |||||||| || ||||||||||| || |||| |||| |||||| |||||||| | |||| ||||||| |||||||||| || | ||| |
|
|
| T |
22436673 |
aagaatttgcaacattcattttccttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaatatttaagtt |
22436772 |
T |
|
| Q |
426 |
ccatacatcatcaaacacaacaacgtac |
453 |
Q |
| |
|
||||||||| |||||||| |||| |||| |
|
|
| T |
22436773 |
ccatacatcgtcaaacacgacaaagtac |
22436800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 448
Target Start/End: Original strand, 22630401 - 22630599
Alignment:
| Q |
247 |
ttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttacaagaaagtgcaacatctatat |
346 |
Q |
| |
|
||||| |||||||| |||| ||| |||||||||| |||| ||| || ||||||||||||| ||| ||||| ||||||||| | ||||||||| | | |
|
|
| T |
22630401 |
ttctttttaaacaattccaaagactgttcttcagataaacgttccagctcatgcactttgccaa---aagatttcttacaagcatctgcaacatccttgt |
22630497 |
T |
|
| Q |
347 |
tccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaacacaac |
446 |
Q |
| |
|
| |||||||| || |||||||||| |||||||| |||||||| | |||| ||||||| |||| |||||| || | |||||||||||||||||| || |
|
|
| T |
22630498 |
ttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcataccaaaattgtgcctcccatacatcatcaaacactac |
22630597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 453
Target Start/End: Original strand, 22367884 - 22368093
Alignment:
| Q |
244 |
gccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttacaagaaagtgcaacatcta |
343 |
Q |
| |
|
||||||||||| ||||| || | ||||| ||||||| ||||| || | | |||||||| |||| |||||| ||||||||| | ||||||||| |
|
|
| T |
22367884 |
gccttcttattgaacaattctaaagatttttcttcacttaaaccttcaagtttatgcacttcaacaaaagaagatttcttacaagcatctgcaacatcct |
22367983 |
T |
|
| Q |
344 |
tattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaacac |
443 |
Q |
| |
|
|| |||||||| || |||||||||| |||||||| |||||||| | || | ||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
22367984 |
cgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagaaaattcaatatcattccaaaaatgtgagtcccatacatcatcaaacac |
22368083 |
T |
|
| Q |
444 |
aacaacgtac |
453 |
Q |
| |
|
||||||||| |
|
|
| T |
22368084 |
tacaacgtac |
22368093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 440
Target Start/End: Original strand, 22458443 - 22458642
Alignment:
| Q |
241 |
aatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttacaagaaagtgcaacat |
340 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||| ||||| ||| || || |||| ||||| |||| |||||| ||||||| | | |||||||| |
|
|
| T |
22458443 |
aatgtcttcttattgaacaactccaaagattgttgttcagccaaacctttcatttcatacacttcaacaaaagaagatttcttacatgcatttgcaacat |
22458542 |
T |
|
| Q |
341 |
ctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaa |
440 |
Q |
| |
|
| || || |||||||| || |||||||||| || |||||||||||||| | |||| ||| || |||| ||||||||| | | |||||||||||||||| |
|
|
| T |
22458543 |
ccatgtttcttgttgtgattaatatcttacaaccctttttattatcaatcatagcaaatttgatatcatcccaaaaatgtaagctccatacatcatcaaa |
22458642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 440
Target Start/End: Original strand, 22481424 - 22481623
Alignment:
| Q |
241 |
aatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttacaagaaagtgcaacat |
340 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||| ||||| ||| || || |||| ||||| |||| |||||| ||||||| | | |||||||| |
|
|
| T |
22481424 |
aatgtcttcttattgaacaactccaaagattgttgttcagccaaacctttcatttcatacacttcaacaaaagaagatttcttacatgcatttgcaacat |
22481523 |
T |
|
| Q |
341 |
ctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaa |
440 |
Q |
| |
|
| || || |||||||| || |||||||||| || |||||||||||||| | |||| ||| || |||| ||||||||| | | |||||||||||||||| |
|
|
| T |
22481524 |
ccatgtttcttgttgtgattaatatcttacaaccctttttattatcaatcatagcaaatttgatatcatcccaaaaatgtaagctccatacatcatcaaa |
22481623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 443
Target Start/End: Original strand, 22467908 - 22468104
Alignment:
| Q |
244 |
gccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttacaagaaagtgcaacatcta |
343 |
Q |
| |
|
|||||||| |||||||| |||| || |||||||||| |||| ||| || |||||||||||| ||| ||||| ||||||||| | ||||||| | |
|
|
| T |
22467908 |
gccttctttttaaacaattccaaggactgttcttcagataaacgttccagctcatgcactttaccaa---aagatttcttacaagcatctgcaacaacct |
22468004 |
T |
|
| Q |
344 |
tattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaacac |
443 |
Q |
| |
|
| || || ||||| || |||||||||| |||||||| |||||||| | |||| ||||||| |||| ||||||||| | |||||||||||||||||| |
|
|
| T |
22468005 |
tgtttctcgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcataccaaaaatgtgaatcccatacatcatcaaacac |
22468104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 449
Target Start/End: Original strand, 22357866 - 22358164
Alignment:
| Q |
151 |
acaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaac-aacattt--gtcaaattgaaatgcct |
247 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| | ||||||||||||| || | || |||||||| ||||| |||| || ||||||| |
|
|
| T |
22357866 |
acaattgctagtggtaatcctttgcattttttaacaattttggaagatatatcaataagattttctggacaacgtccatttaagtca---tggaatgcct |
22357962 |
T |
|
| Q |
248 |
tcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttacaagaaagtgcaacatctatatt |
347 |
Q |
| |
|
||||||| |||||||| | |||||||||| |||| ||| || | |||| ||||| |||| |||||| ||||||||| | |||||||| || || |
|
|
| T |
22357963 |
tcttattgaacaactcaaaagattgttctacagtcaaaccttttagttcatacacttcaacaaaagaagatttcttacaagtattcgcaacatccatgtt |
22358062 |
T |
|
| Q |
348 |
ccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaacacaaca |
447 |
Q |
| |
|
||||| || || |||||| || || ||||| |||||||| | |||| ||||||| |||| | ||||||| | |||||||||||||||||| ||| |
|
|
| T |
22358063 |
tcttgtagtgattaatatcctagaaccctttttgttatcaatcatagcaaattcaatatcatgcaaaaaatgtgactcccatacatcatcaaacactaca |
22358162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 396
Target Start/End: Complemental strand, 22105130 - 22105080
Alignment:
| Q |
346 |
ttccttgttgttataaatatcttacttccatttttattatcaattacagca |
396 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
22105130 |
ttccttgttgttataagtatcctacttccttttttattatcaaatacagca |
22105080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 281
Target Start/End: Original strand, 22442609 - 22442739
Alignment:
| Q |
151 |
acaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaacaacattt---gtcaaattgaaatgcct |
247 |
Q |
| |
|
||||||||||||||||| || |||||||||| |||||| | |||||||| |||| || | ||||||||||| | || |||| |||||||||| |
|
|
| T |
22442609 |
acaattgctagtggtaatccattgcatttttcaacaattttggaagatataccaataagattttttggacaacgtccgtttaagtca---tgaaatgcct |
22442705 |
T |
|
| Q |
248 |
tcttattaaacaactccagagattgttcttcagt |
281 |
Q |
| |
|
||||||| |||||||||| |||||||||| |||| |
|
|
| T |
22442706 |
tcttattgaacaactccaaagattgttctacagt |
22442739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 416
Target Start/End: Complemental strand, 22208532 - 22208354
Alignment:
| Q |
241 |
aatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaag---cgaagatctcttacaagaaagtgcaa |
337 |
Q |
| |
|
||||||||||||| ||| | ||||| ||||| ||| | | | ||||||| |||||||||||||| | || |||||| ||||||||||| | |||| |
|
|
| T |
22208532 |
aatgccttcttataaaaaagctccaaagatttttcatgactcaaaggtttcaactcatgcacttcaagaaaaaacgaagacctcttacaagacatggcaa |
22208433 |
T |
|
| Q |
338 |
catctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaa |
416 |
Q |
| |
|
|||| || ||||| ||||| || |||| | ||||||| |||||| ||||||| | || | || |||| ||||||||||| |
|
|
| T |
22208432 |
catcaatcttcctagttgtgattaataccctacttccttttttactatcaatcaaagaaaatccaatatcattccaaaa |
22208354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 22353770 - 22353831
Alignment:
| Q |
244 |
gccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcacttt |
305 |
Q |
| |
|
|||||||| |||||||| |||| |||||||| ||||| |||| ||| || |||||||||||| |
|
|
| T |
22353770 |
gccttctttttaaacaaatccaaagattgtttttcagataaacgttccagctcatgcacttt |
22353831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 22458353 - 22458425
Alignment:
| Q |
151 |
acaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaac |
223 |
Q |
| |
|
|||||||||||||| || || |||||||||| |||||| | | ||||||||||||| || | || |||||||| |
|
|
| T |
22458353 |
acaattgctagtggcaatccattgcatttttcaacaattttaaaagatatatcaataagattttctggacaac |
22458425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 22481334 - 22481406
Alignment:
| Q |
151 |
acaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaac |
223 |
Q |
| |
|
|||||||||||||| || || |||||||||| |||||| | | ||||||||||||| || | || |||||||| |
|
|
| T |
22481334 |
acaattgctagtggcaatccattgcatttttcaacaattttaaaagatatatcaataagattttctggacaac |
22481406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 129 - 445
Target Start/End: Complemental strand, 34989844 - 34989525
Alignment:
| Q |
129 |
agataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaacaacat |
228 |
Q |
| |
|
|||||||||||| || || | ||||||||||||||||| || ||||| || || |||| ||| ||| ||||||||||||||||||||||||||| | | |
|
|
| T |
34989844 |
agataaaagaccaccaatagtcacaattgctagtggtaagcccttgcacttcctagcaatttcaaaagctatatcaatgagctcttttggacaacatcct |
34989745 |
T |
|
| Q |
229 |
tt---gtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttac |
325 |
Q |
| |
|
| |||||||||||||||||||||||| ||||| || | ||||||||||||||||| ||||| | |||||||||| | || |||||| |||||| |
|
|
| T |
34989744 |
tccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaatggttgtagttcatgcacttcaataaatgaagatttcttac |
34989645 |
T |
|
| Q |
326 |
aagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgtt |
425 |
Q |
| |
|
|| | | |||||||| |||| ||||| || |||||||||||||| ||||||||||||||| | ||| || |||||||||||| ||||||| |||| |
|
|
| T |
34989644 |
aatacatggcaacatccttatttcttgtggtaataaatatcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgtt |
34989545 |
T |
|
| Q |
426 |
ccatacatcatcaaacacaa |
445 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34989544 |
ccatacatcatcaaacacaa |
34989525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 129 - 445
Target Start/End: Original strand, 2305324 - 2305643
Alignment:
| Q |
129 |
agataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaacaacat |
228 |
Q |
| |
|
|||||||||||| || || | ||||||||||| ||||| || ||||| || || | || ||| ||||||||||||||||||||||||||||||| | | |
|
|
| T |
2305324 |
agataaaagaccaccaatagttacaattgctaggggtaagcccttgcacttcctagcgatttcaaaagatatatcaatgagctcttttggacaacatcct |
2305423 |
T |
|
| Q |
229 |
tt---gtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttac |
325 |
Q |
| |
|
| |||||||||||||||||||||||||||||| || | ||| ||| ||||||||| |||| | |||||||||| | || |||||| |||||| |
|
|
| T |
2305424 |
tcaaagtcaaattgaaatgccttcttattaaacaaatcaaattatttttcctcagttaaaagttgtagttcatgcacttgaataaaagaagatttcttac |
2305523 |
T |
|
| Q |
326 |
aagaaagtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgtt |
425 |
Q |
| |
|
|| | | |||||||| ||||| ||||| || |||||||||||||| |||||||||| |||| | | |||| |||||||||||| ||||||| |||| |
|
|
| T |
2305524 |
aatatatggcaacatccatatttcttgtggtaataaatatcttactaccatttttatgatcactcatagcatattcaatctcatcccaaaaacttgtgtt |
2305623 |
T |
|
| Q |
426 |
ccatacatcatcaaacacaa |
445 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
2305624 |
ccatacattatcaaacacaa |
2305643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 445
Target Start/End: Complemental strand, 34975772 - 34975690
Alignment:
| Q |
363 |
tatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaacacaa |
445 |
Q |
| |
|
||||||||| ||||||||||||||| | ||| || |||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
34975772 |
tatcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaa |
34975690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 445
Target Start/End: Complemental strand, 34980551 - 34980470
Alignment:
| Q |
364 |
atcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaacacaa |
445 |
Q |
| |
|
|||||||| ||||||||||||||| | ||| || |||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
34980551 |
atcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaa |
34980470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold1439
Description:
Target: scaffold1439; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 149 - 380
Target Start/End: Original strand, 1452 - 1686
Alignment:
| Q |
149 |
caacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctcttttggacaacaacattt---gtcaaattgaaatgc |
245 |
Q |
| |
|
||||||||||||| ||||| || ||||| || || | || ||| ||||||||||||||||||||||||||||||| | || ||||||||||||||| |
|
|
| T |
1452 |
caacaattgctaggggtaagcccttgcacttcctagcgatttcaaaagatatatcaatgagctcttttggacaacatccttccaagtcaaattgaaatgc |
1551 |
T |
|
| Q |
246 |
cttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttacaagaaagtgcaacatctata |
345 |
Q |
| |
|
||||||||||||||| || | |||| |||||||||||||||||| | |||||||||| | || |||||| |||||||| | | |||||||| ||| |
|
|
| T |
1552 |
cttcttattaaacaaatcaaatgatttttcttcagttaaaggttgtagttcatgcacttcaataaaagaagatttcttacaatacacagcaacatccata |
1651 |
T |
|
| Q |
346 |
ttccttgttgttataaatatcttacttccattttt |
380 |
Q |
| |
|
|| ||||| || |||||||||||||| |||||||| |
|
|
| T |
1652 |
tttcttgtggtaataaatatcttactaccattttt |
1686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 445
Target Start/End: Original strand, 1714 - 1795
Alignment:
| Q |
364 |
atcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaacacaa |
445 |
Q |
| |
|
|||||||| ||||||||||||||| | ||| || |||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
1714 |
atcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaa |
1795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 408
Target Start/End: Complemental strand, 40580510 - 40580333
Alignment:
| Q |
231 |
gtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgacaagcgaagatctcttacaagaa |
330 |
Q |
| |
|
||||||||||||||||||||| || ||||| || | |||| |||||| ||||||||||| | |||||||||| | || ||| || |||||||| | |
|
|
| T |
40580510 |
gtcaaattgaaatgccttcttgttgaacaaatcaaatgatttttcttctgttaaaggttgtagttcatgcacttcaataaaagaaaatttcttacaatac |
40580411 |
T |
|
| Q |
331 |
agtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctca |
408 |
Q |
| |
|
| ||||||||| ||| | |||| || |||||||||||||| ||||||||||||||| | | |||| ||||||||||| |
|
|
| T |
40580410 |
actgcaacatccatacttcttgaggtaataaatatcttactaccatttttattatcactcatagcatattcaatctca |
40580333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 27373143 - 27373034
Alignment:
| Q |
114 |
atttttatctcttaaagataaaagacctccgatggcaacaattgctagtggtaaacctttgcattttttaacaatatcataagatatatcaatgagctct |
213 |
Q |
| |
|
|||||| ||| ||| |||||||||||| | || ||||||| || |||||||||| ||||||||||||| | |||| | ||| |||||||| |||||| |
|
|
| T |
27373143 |
atttttctcttttatagataaaagaccatcaatagcaacaaatggtagtggtaaatctttgcattttttca-aatagcggaagctatatcaacgagctcc |
27373045 |
T |
|
| Q |
214 |
tttggacaaca |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
27373044 |
tttggacaaca |
27373034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 40580323 - 40580244
Alignment:
| Q |
358 |
ataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatc |
437 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | | |||| ||||||| ||| ||||||| |||||||||||||||| |
|
|
| T |
40580323 |
ataaatatcttactaccatttttattatcactcatagcatattcaatatcaccccaaaaacttttgttccatacatcatc |
40580244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 452
Target Start/End: Original strand, 872796 - 872890
Alignment:
| Q |
358 |
ataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaacacaacaacgta |
452 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || ||||||| |||| | |||||| | | |||| | ||||| ||||||||||||||| |
|
|
| T |
872796 |
ataaatatcttacttccctttttattatcaattacaacaaattcaatatcatccataaaatgtacgctccaaaaatcattaaacacaacaacgta |
872890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 452
Target Start/End: Original strand, 1234073 - 1234167
Alignment:
| Q |
358 |
ataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaacacaacaacgta |
452 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || ||||||| |||| | |||||| | | |||| | ||||| ||||||||||||||| |
|
|
| T |
1234073 |
ataaatatcttacttccctttttattatcaattacaacaaattcaatatcatccataaaatgtacgctccaaaaatcattaaacacaacaacgta |
1234167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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