View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_high_7 (Length: 441)
Name: NF18500_high_7
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 70427 - 70861
Alignment:
| Q |
13 |
aatattgatatgattgctctttcatttgttcgtaagggctctgatcttgttaatgtccgcaaggttctcgggccacatgctaagcatattcagttgatgt |
112 |
Q |
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| T |
70427 |
aatattgatatgattgctctttcatttgttcgtaagggctctgatcttgttaatgtccgcaaggttctcgggccacatgctaagcatattcagttgatgt |
70526 |
T |
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| Q |
113 |
caaaggtagaat----------------------tttaataatgatataaaggatcgccatttcatttgtttgtgctgttaattttccccccttcaccat |
190 |
Q |
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| T |
70527 |
caaaggtagaattttaattgaattcttctgcaattttaataatgatataaaggatcgccatttcatttgtttgtgatgttaattttccccccttcaccat |
70626 |
T |
|
| Q |
191 |
taatgaattgcatgtccttgttgatatatcttctaatgattgtctgtttaatatgaacaagtactaacttgtgtgtttatgtttcttacaccaattcaga |
290 |
Q |
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| T |
70627 |
taatgaattgcatgtccttgttgatatatcttctaatgattgtctgtttaatatgaacaagtactaacttgtgtgtttatgtttcttacaccaattcaga |
70726 |
T |
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| Q |
291 |
agtcctgattaattggtttttaagtaatgattttgtggaatttcatttcaaggttgagaatcaggagggagtcatgaactttgatgagatcctgcgtgag |
390 |
Q |
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| T |
70727 |
agtcctgattaattggtttttaagtaatgattttgtggaatttcatttcaaggttgagaatcaggagggagtcatgaactttgatgagatcctgcgtgag |
70826 |
T |
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| Q |
391 |
actgatgcattcatggtggcacgtggtgatcttgg |
425 |
Q |
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| T |
70827 |
actgatgcattcatggtggcacgtggtgatcttgg |
70861 |
T |
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