View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18500_high_8 (Length: 430)
Name: NF18500_high_8
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 37307771 - 37307456
Alignment:
| Q |
18 |
aggagggttgaccgtgtacattcacacgttacaaatgtcaaagaacataatgtagttccaagacttgaaccaatgcaccgtagataagtaaacgtagcca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37307771 |
aggagggttgaccgtgtacattcacacgttacaaatgtcaaagaacataatgtagttccaagacttgaaccaatgcaccgtagataagtaaacgtagcca |
37307672 |
T |
|
| Q |
118 |
ataataacctacttcacgatgcatattcacaaaagaccttcttgtaagaatgaggcattgggttaaaaagtcagcatgacttttctttttcattgtgtcg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37307671 |
ataataacctacttcacgatgcatattcacaaaagaccttcttgtaagaatgaggcattgggttaaaaagtcagcatgacttttctttttccttgtgtcg |
37307572 |
T |
|
| Q |
218 |
aagacctgcatgcatcaatttgttcatcaacttttatattctcttttgtgatcttagcttaaattag-nnnnnnnnaaataagaacatacacttcccttg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37307571 |
aagacctgcatgcatcaatttgttcatcaacttttatattctcttttgtgatcttagcttaaattagtttttttttaaataagaacatacacttcccttg |
37307472 |
T |
|
| Q |
317 |
aactataaatcagttc |
332 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37307471 |
aactataaatcagttc |
37307456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 378 - 419
Target Start/End: Complemental strand, 37307410 - 37307369
Alignment:
| Q |
378 |
gagtcacgcttaataaaaataggtaactgtaatctgtgctgc |
419 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
37307410 |
gagtcacgcttaataaaaatatgtaactgtaatctgggctgc |
37307369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University