View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_high_9 (Length: 427)
Name: NF18500_high_9
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 45604356 - 45603935
Alignment:
| Q |
1 |
tcaagaagttacaatgcaagaaggacccttcaatggagagtttcataatagtgtgactaacatttcagccactgagatgttcaattcacagattaaattt |
100 |
Q |
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| T |
45604356 |
tcaagaagttacaatgcaagaaggacccttcaatggagagtttcataatagtgtgactaacatttcagccactgagatgttcaattcacagattaaattt |
45604257 |
T |
|
| Q |
101 |
gcaaatcaaattgtgggaaatgggtttgtccattgcatgcctggagttgatttaagtaacaatttcaatctaagcaatgatgcaatgtacgtttgagggc |
200 |
Q |
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| T |
45604256 |
gcaaatcaaattgtgggaaatgggtttgtccattgcatgcctggagttgatttaagtaacaatttcaatctaagcaatgatgcaatgtacgtttgagggc |
45604157 |
T |
|
| Q |
201 |
tttgaattatacatactgaattatgtatgtcatgtattgtatttactatattcctcctacgaaattcaaatgatttcaatatccacagggttaccatata |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
45604156 |
tttgaattatacatactgaattatgtatgtaatgtattgtatttactatattcctcctaccaaattcaaatgatttcaatttccacagggttaccatata |
45604057 |
T |
|
| Q |
301 |
cacatgaaattatttgttattttgctagagttgcttttgtgcacacacatgtaatttcatttttagattaagaactaattact----atatggtactctt |
396 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
45604056 |
cacatgaaattatttgttattttgttagagttgcttttgtgcacacacatgtaatttcatttttagattaagaactaattactatatatatggtgctctt |
45603957 |
T |
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| Q |
397 |
catatgttattcatgggatatt |
418 |
Q |
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|||||||||||| ||||||||| |
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| T |
45603956 |
catatgttattcctgggatatt |
45603935 |
T |
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