View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18500_low_1 (Length: 709)
Name: NF18500_low_1
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 665; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 16 - 696
Target Start/End: Original strand, 3070035 - 3070715
Alignment:
| Q |
16 |
gaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacatacccttttgttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070035 |
gaaattatctcaagtagcactacaccataactatacacatcaaccttagctgtgataggcatgtttttaaaccattcaagtgcaacatacccttttgttc |
3070134 |
T |
|
| Q |
116 |
cccttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgtt |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070135 |
ctcttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgtt |
3070234 |
T |
|
| Q |
216 |
ctgaggctttatgtcacaatggatgatcctagtgatgcactcttcgtgtaaatacacaagtcctctagctatacctattgcaagttctagcctcagtttc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3070235 |
ctgaggctttatgtcacaatggatgatcctagtgatgcactcttcatgtaaatacacaagtcctctagctatacctattgcaagttctagccttagtttc |
3070334 |
T |
|
| Q |
316 |
caacttggtttttgtttctcatcatcagcattgaaaagaaaacttgccaaagtgccattgctcatgtactcataaacaagcaatctttcacttctacact |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070335 |
caacttggtttttgtttctcatcatcagcattgaaaagaaaacttgccaaagtgccattgctcatgtactcataaacaagcaatctttcacttctacact |
3070434 |
T |
|
| Q |
416 |
cacaaaatccaagtaaacgaaccaagttcttgtgatgagtgagaccaatggaattcaactcattcctgaattccctatgggcttgatccaacaaaaaact |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070435 |
cacaaaatccaagtaaacgaaccaagttcttgtgatgagtgagaccaatggaattcaactcattcctgaattccctatgggcttgatccaacaaaaaact |
3070534 |
T |
|
| Q |
516 |
gtttaacttttgcactgccacccgagttttggaatctgtgtcgttgttgatgactccttcgtaaacaataccaaaagctccccttcctagctctttgtca |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070535 |
gtttaacttttgcactgccacccgagttttggaatctgtgtcgttgttgatgactccttcgtaaacaataccaaaagctccccttcctagctctttgtca |
3070634 |
T |
|
| Q |
616 |
aatccattggtagcttcttcaagctcttcataagtgaagcaacacaaattggatttaatttcaacacacgtgtcacctttg |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070635 |
aatccattggtagcttcttcaagctcttcataagtgaagcaacacaaattggatttaatttcaacacacgtgtcacctttg |
3070715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 667
Target Start/End: Complemental strand, 3056877 - 3056232
Alignment:
| Q |
16 |
gaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacatacccttttgttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056877 |
gaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacatacccttttgttc |
3056778 |
T |
|
| Q |
116 |
cccttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgtt |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
3056777 |
ctcttatgccagtgttggttttgctttgattcatgttcaacaacttggctaatccaaaatcagaaattcttgcattgaaataatcatccaggagtatgtt |
3056678 |
T |
|
| Q |
216 |
ctgaggctttatgtcacaatggatgatcctagtgatgcactcttcgtgtaaatacacaagtcctctagctatacctattgcaagttctagcctcagtttc |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
3056677 |
ttgaggctttatgtcacaatggataatcctagtgatgcactcttcatgtaaatacacaagtcctctagctattcctattgcaagttctagccttagtttc |
3056578 |
T |
|
| Q |
316 |
caacttggtttttgtttctcatcatcagcattgaaaagaaaacttgccaaagtgccattgctcatgtactcataaacaagcaatctttcacttctacact |
415 |
Q |
| |
|
||| |||| || ||||| || | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
3056577 |
caatttggcttctgtttttctt------cattgaaaagaaaacttgccaaagtgctattgctcatgtactcataaacaagcaatctttcacttccactcc |
3056484 |
T |
|
| Q |
416 |
cacaaaatccaagtaaacgaaccaagttcttgtgatgagtgagaccaatggaattcaactcattcctgaattccctatgggcttgatccaacaaaaaact |
515 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
3056483 |
cgcaaaatccaagtaaacgaaccaagttcttgtgatgagtgagaccaatgacattcagctcattcctgaattcccgatgagcttgatccaacagaaaact |
3056384 |
T |
|
| Q |
516 |
gtttaacttttgcactgccacccgagttttggaatctgtgtcgttgttgatgactccttcgtaaacaataccaaaagctccccttcctagctctttgtca |
615 |
Q |
| |
|
||| ||||| | ||||||||| ||||||||| || ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
3056383 |
gttcaacttcttcactgccacgcgagttttgcaagttgtgttgttgttgatgactccttcgtaaactattccaaaagctccccttcctagctctttgtca |
3056284 |
T |
|
| Q |
616 |
aatccattggtagcttcttcaagctcttcataagtgaagcaacacaaattgg |
667 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3056283 |
aatccattggtagcttcttcaagctcttcataagtgaagcaacgcaaattgg |
3056232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 16 - 679
Target Start/End: Complemental strand, 3036009 - 3035352
Alignment:
| Q |
16 |
gaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacatacccttttgttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3036009 |
gaaattatctcaagtagcactacaccataactatacacatccaccttagctgtgataggcatgtttttaaaccattcaagtgcaacatacccttttattc |
3035910 |
T |
|
| Q |
116 |
cccttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgtt |
215 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3035909 |
ctcttatgccggtgttggttttgctttgattcatgttcaacaactttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgtt |
3035810 |
T |
|
| Q |
216 |
ctgaggctttatgtcacaatggatgatcctagtgatgcactcttcgtgtaaatacacaagtcctctagctatacctattgcaagttctagcctcagtttc |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
3035809 |
ttgaggctttatgtcacaatgaatgatcctagtgatgcactcttcatgtaaatacacaagtcctctagctattcctattgcaagttctagccttagtttc |
3035710 |
T |
|
| Q |
316 |
caacttggtttttgtttctcatcatcagcattgaaaagaaaacttgccaaagtgccattgctcatgtactcataaacaagcaatctttcacttctacact |
415 |
Q |
| |
|
||| |||| || ||||| || | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || |
|
|
| T |
3035709 |
caatttggcttctgtttttctt------cattgaaaagaaaacttgccaaagtgctattgctcatgtactcataaacaagcagtctttcacttccactct |
3035616 |
T |
|
| Q |
416 |
cacaaaatccaagtaaacgaaccaagttcttgtgatgagtgagaccaatggaattcaactcattcctgaattccctatgggcttgatccaacaaaaaact |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| |||| ||||||||||||| |||||| |
|
|
| T |
3035615 |
cacaaaatccaagtaaacgaaccaagttcttgtgatgagtgagaccaatggcattcagttcattcctaaattccttatgagcttgatccaacataaaact |
3035516 |
T |
|
| Q |
516 |
gtttaacttttgcactgccacccgagttttggaatctgtgtcgttgttgatgactccttcgtaaacaataccaaaagctccccttcctagctctttgtca |
615 |
Q |
| |
|
||| ||||||| |||||||| |||| ||||||| | |||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3035515 |
gttcaacttttttactgccacacgagctttggaagcggtgttgttgttgacgactccttcataaacaataccaaaagctccccttcctagctctttgtcg |
3035416 |
T |
|
| Q |
616 |
aatccattggtagcttcttcaagctcttcataagtgaagcaacacaaattggatttaatttcaa |
679 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
3035415 |
aatccattagtagcttcttcaagctctgcataagtgaagcaacgcaaatgggattcaatttcaa |
3035352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 67 - 370
Target Start/End: Complemental strand, 21457736 - 21457429
Alignment:
| Q |
67 |
gtgataggcatgtttttaaa-ccattcaagtgcaacatacccttttgttccccttatgccagtgttggttttgctttgattcatgttcaacagctttgct |
165 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| || ||||| |||| ||||||||||| |||||||||||| ||| |||||||||||||| |||||| |
|
|
| T |
21457736 |
gtgatatgcatgtttttaaaaccattcaagtgaaagataccattttcttccccttatggcagtgttggtttcgctcaaattcatgttcaacaattttgct |
21457637 |
T |
|
| Q |
166 |
aatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttctgaggctttatgtca-----caatggatgatcctagtgatgcactcttc |
260 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |||| |||||||||| ||||| ||||||| |
|
|
| T |
21457636 |
aatccaaagtcagaaattcttgcattgaagtaatcatcaatgggtatgttttgaggctttatgtcacaagtcaatagatgatcctattgatggactcttc |
21457537 |
T |
|
| Q |
261 |
gtgtaaatacacaagtcctctagctatacctattgcaagttctagcctcagtttccaacttggtttttgtttctcatcatcagcattgaaaagaaaactt |
360 |
Q |
| |
|
|||||| | || ||| |||||||||| ||||||||| ||| || || ||||||||| |||| || | ||||||| || | || ||||||||||||| |
|
|
| T |
21457536 |
atgtaaa-ataccagtactctagctatccctattgcattttcaagtcttagtttccaatttgg-ttctctttctcaccaccgccaccgaaaagaaaactt |
21457439 |
T |
|
| Q |
361 |
gccaaagtgc |
370 |
Q |
| |
|
|||||||||| |
|
|
| T |
21457438 |
gccaaagtgc |
21457429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 28488189 - 28488042
Alignment:
| Q |
95 |
gtgcaacatacccttttgttccccttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaa |
194 |
Q |
| |
|
|||||||||||||||||||||| || || ||||| | || | ||||||||| || ||| ||||||| |||||||||||| ||||| ||||||||| | |
|
|
| T |
28488189 |
gtgcaacatacccttttgttcctctaattccagtttcagtgtggctttgattaatcaacaatagctttgataatccaaaatctgaaatccttgcattgta |
28488090 |
T |
|
| Q |
195 |
gtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgat |
242 |
Q |
| |
|
| |||||| || ||||| || || |||||||| |||||||||||||| |
|
|
| T |
28488089 |
ttgatcatctagaagtatattttgtggctttatatcacaatggatgat |
28488042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 28445582 - 28445435
Alignment:
| Q |
95 |
gtgcaacatacccttttgttccccttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaa |
194 |
Q |
| |
|
|||||||||| || || ||||| ||||| ||||| | ||| | ||||||||| || ||| | |||||||||||||||||| ||||||||||||||| | |
|
|
| T |
28445582 |
gtgcaacatatcccttagttcctcttattccagtttcggtatggctttgattaatcaacaataactttgctaatccaaaatctgaaattcttgcattgta |
28445483 |
T |
|
| Q |
195 |
gtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgat |
242 |
Q |
| |
|
| |||||| || ||||| || || |||||||| || ||||||||||| |
|
|
| T |
28445482 |
ttgatcatctagaagtatattttgtggctttatatcgcaatggatgat |
28445435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 28466428 - 28466281
Alignment:
| Q |
95 |
gtgcaacatacccttttgttccccttatgccagtgttggttttgctttgattcatgttcaacagctttgctaatccaaaatcagaaattcttgcattgaa |
194 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||| | || | ||||||||| || ||| ||||||| |||||||||||| ||||| ||||||||| | |
|
|
| T |
28466428 |
gtgcaacataccctttggttcctctaattccagtttcagtgtggctttgattaatcaacaatagctttgataatccaaaatctgaaatccttgcattgta |
28466329 |
T |
|
| Q |
195 |
gtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgat |
242 |
Q |
| |
|
| |||||| || ||||| || || |||||||| |||||||||||||| |
|
|
| T |
28466328 |
ttgatcatctagaagtatattttgtggctttatatcacaatggatgat |
28466281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 628
Target Start/End: Complemental strand, 21457385 - 21457268
Alignment:
| Q |
507 |
caaaaaactgtttaacttttgcactgccacccgagttttggaatctgtgtcgttgttgatgactccttcgtaaacaataccaaaagctccccttcctagc |
606 |
Q |
| |
|
||||||| |||| || |||| ||||||||| | |||||||||| |||| || ||||||||||||| ||| ||||||||||| ||| ||||| | || |
|
|
| T |
21457385 |
caaaaaattgttcaattttttcactgccacgccagttttggaacatgtgg---tgctgatgactccttcataa-caataccaaaacctctccttctttgc |
21457290 |
T |
|
| Q |
607 |
tctttgtcaaatccattggtag |
628 |
Q |
| |
|
||||||||||||| || ||||| |
|
|
| T |
21457289 |
tctttgtcaaatctatcggtag |
21457268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 28438068 - 28437986
Alignment:
| Q |
160 |
tttgctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgat |
242 |
Q |
| |
|
|||||||| || ||||| ||||| | |||||| | | |||||| || |||||||| || ||||||||||||||||||||||| |
|
|
| T |
28438068 |
tttgctaaaccgaaatcggaaatcttagcattgtaatcatcatctagaagtatgttttgtggctttatgtcacaatggatgat |
28437986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 4107504 - 4107398
Alignment:
| Q |
166 |
aatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttctgaggctttatgtcacaatggatgatcctagtgatgcactcttcgtgta |
265 |
Q |
| |
|
||||| || |||||||| |||| ||||||| ||||| | |||||| || |||||||||||||||||||| ||||| |||| |||||||| |||| |
|
|
| T |
4107504 |
aatccgaagtcagaaatctttgctgtgaagtactcatctatgagtatattttgaggctttatgtcacaatgaatgatgggagtgtcacactcttcatgta |
4107405 |
T |
|
| Q |
266 |
aatacac |
272 |
Q |
| |
|
||||||| |
|
|
| T |
4107404 |
aatacac |
4107398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 11004968 - 11004904
Alignment:
| Q |
163 |
gctaatccaaaatcagaaattcttgcattgaagtaatcatcaaggagtatgttctgaggctttat |
227 |
Q |
| |
|
||||||||||||||||||| | ||| |||||| | |||||||| || ||||| ||||||||||| |
|
|
| T |
11004968 |
gctaatccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttat |
11004904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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