View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18500_low_11 (Length: 408)
Name: NF18500_low_11
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_11 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 9279931 - 9279544
Alignment:
| Q |
1 |
ataacagacgtgtgggagcaacaactgcagtttatctggcatcaattctagagtatctgacatcgaaagttcttgagctagctggaaatgaaggttaaga |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| || |||||||||| ||||||||| |
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| T |
9279931 |
ataacagacgtgtgggagcaataactgcagtttatctggcatcaattctagagtatctgactgcggaagttcttgaactggctggaaatgcaggttaaga |
9279832 |
T |
|
| Q |
101 |
tttgaaggtgaagaggatcacaccaaggcatttgcagctggctattaggggagatgaggaacccttatcaagggaacacttgttggtggtggtgtcattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
9279831 |
tttgaaggtgaagaggatcacaccaaagcatttgcagctggctattaggggagatgaggaacccttatcaagggaacaattgttggtggtggtgtcattt |
9279732 |
T |
|
| Q |
201 |
ctaacattcacaagtccttgatcaacaaaactgccaaagaacgagttctttacttttgttgtcacgtggtgctgtttattttaattaggggtgtgttttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
9279731 |
ctaacattcacaagtccttgatcaacaaaactgccaaagaacgag-tctttacttttgttgtcatgtggtgctgtttattttaattaggggtgtgttttt |
9279633 |
T |
|
| Q |
301 |
tattatgacttgaattgacttcaaatgatagagatcacagtagggtagttttagaattttgaatgaatttatatggtagtgtataaatg |
389 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
9279632 |
tattatgacttggattgacttgaaatgatagtgatcacagtagggtagttttagaattttgaatgaatttatatggtagtgtgtaaatg |
9279544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 9290902 - 9290657
Alignment:
| Q |
1 |
ataacagacgtgtgggagcaacaactgcagtttatctggcatcaattctagagtatctgacatcgaaagttcttgagctagctggaaatgaaggttaaga |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| || |||||||||| ||||||||| |
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|
| T |
9290902 |
ataacagacgtgtgggagcaataactgcagtttatctggcatcaattctagagtatctgactgcggaagttcttgaactggctggaaatgcaggttaaga |
9290803 |
T |
|
| Q |
101 |
tttgaaggtgaagaggatcacaccaaggcatttgcagctggctattaggggagatgaggaacccttatcaagggaacacttgttggtggtggtgtcattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9290802 |
tttgaaggtgaagaggatcacaccaaagcatttgcagctggctattaggggagatgaggaacccttatcaagggaacaattgttggtggtggtgtcattt |
9290703 |
T |
|
| Q |
201 |
ctaacattcacaagtccttgatcaacaaaactgccaaagaacgagt |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9290702 |
ctaacattcacaagtccttgatcaacaaaactgccaaagaacgagt |
9290657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 9247468 - 9247196
Alignment:
| Q |
11 |
tgtgggagcaacaactgcagtttatctggcatcaattctagagtatctgacatcgaaagttcttgagctagctggaaatgaaggttaagatttgaaggtg |
110 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||||||||||||||||| || |||||||||| || ||||||||| | | |||||||||||||| |
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|
| T |
9247468 |
tgtgggagcaacgactgcagtttatccggcataaattctagagtatctgactgcggaagttcttgaactggctggaaattcaaataaagatttgaaggtg |
9247369 |
T |
|
| Q |
111 |
aagaggatcacaccaaggcatttgcagctggctattaggggagatgagga-------acccttatcaaggg-aacacttgttggtggtggtgtcattcct |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || | || ||||||| || ||||||| |
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| T |
9247368 |
aagaggatcacaccaaggcagttgcagctggctattaggggagatgaggaacttgatacccttatcaagggaaaaaaatgctggtggttgtatcattcca |
9247269 |
T |
|
| Q |
203 |
aacattcacaagtccttgatcaacaaaactgccaaagaacgagttctttacttttgttgtcacgtggtgctgt |
275 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||| |
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|
| T |
9247268 |
cacatccacaagtcctttatcaacaaaactgccaaagaatgagttctttgcttttgttgtcatgtgatgctgt |
9247196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 129 - 389
Target Start/End: Original strand, 9279215 - 9279478
Alignment:
| Q |
129 |
catttgcagctggctattaggggagatgaggaa-------cccttatcaagggaacacttgttggtggtggtgtcattcctaacattcacaagtccttga |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||| ||||| |||||||||||| |
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|
| T |
9279215 |
catttgcagctcgctattaggggagatgaggaatttgatacccttatcaagggaacaattcctggtggttgtgtcattcctcacattgacaagtccttga |
9279314 |
T |
|
| Q |
222 |
tcaacaaaactgccaaagaacgagttctttacttttgttgtcacgtggtgctgtttattttaattagg-ggtgtgttttttattatgacttgaattgact |
320 |
Q |
| |
|
||||| |||||||||||||| ||| ||| |||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| | |
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| T |
9279315 |
tcaac-aaactgccaaagaatgag---tttgcttttgttgtcatttggtgatgtttattttaattaggaggtatgttttttattatgacttgaattgatt |
9279410 |
T |
|
| Q |
321 |
tcaaatgatagagatcacagtagggtagttttagaattttgaatgaatttatatggtagtgtataaatg |
389 |
Q |
| |
|
| |||| || | |||||| |||||||||||||| ||||||||| |||||||||||||||||| |||||| |
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|
| T |
9279411 |
tgaaataatggtgatcaccgtagggtagttttataattttgaa-gaatttatatggtagtgtgtaaatg |
9279478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 369
Target Start/End: Original strand, 51448993 - 51449364
Alignment:
| Q |
7 |
gacgtgtgggagcaacaactgcagtttatctggcatcaattctagagtatctgacatcgaaagttcttgagctagctggaaatgaaggttaagatttgaa |
106 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| | |||| ||||| || |||||||||| | || ||||||||| |
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|
| T |
51448993 |
gacgtgtgggagcaacagctgcagtgtatctggcatcaattctggagtatctgactacagaagtacttgaactggctggaaatgcaagtagagatttgaa |
51449092 |
T |
|
| Q |
107 |
ggtgaagaggatcacaccaaggcatttgcagctggctattaggggagatgaggaac-------ccttatcaagggaacacttgttggtggtggtgtcatt |
199 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |
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|
| T |
51449093 |
tgtgaagaggatcacaccaagacatttgcaactggctattaggggagatgaggaacttgatacccttatcaagggaacgattgctggtggtggtgtcatt |
51449192 |
T |
|
| Q |
200 |
cctaacattcacaagtccttgatcaacaaaactgccaaagaacgagttctttacttttgttgtcacgtgg---tgctgtttattttaattaggggtgtgt |
296 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
51449193 |
cctaacattcacaagtccttgatcaataaaactgccaaagaatgagttcttg-cttttgttgtcatgtggtggtgctgtttattttaattaggggtgtgt |
51449291 |
T |
|
| Q |
297 |
tttttattatgacttgaattgacttcaaatgatagagatcacagtagggtagttttagaattttgaatgaatt |
369 |
Q |
| |
|
|||| || ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||| |
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|
| T |
51449292 |
ttttaatcatgacttgaattgacttaaaatgatgatgatcacagtagggtagttttacaattttgaatcaatt |
51449364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 31454247 - 31454640
Alignment:
| Q |
7 |
gacgtgtgggagcaacaactgcagtttatctggcatcaattctagagtatctgacatcgaaagttcttgagctagctggaaatgaaggttaagatttgaa |
106 |
Q |
| |
|
||||||| ||||||||| ||||||| ||| ||||||| ||||| ||||||||||| | ||||||||||||| |||||||||| | |||||||||| |
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|
| T |
31454247 |
gacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctgactgctgaagttcttgagctggctggaaatgctagcaaagatttgaa |
31454346 |
T |
|
| Q |
107 |
ggtgaagaggatcacaccaaggcatttgcagctggctattaggggagatgagga-------acccttatcaagggaacacttgttggtggtggtgtcatt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||| | | |||||||||||||||| |
|
|
| T |
31454347 |
ggtgaagaggatcacaccaaggcatttgcagcttgccatcaggggagatgaggagcttgatacccttatcaagggaacaatagctggtggtggtgtcatt |
31454446 |
T |
|
| Q |
200 |
cctaacattcacaagtccttgatcaacaaaactgccaaagaacgagttctttacttttgttgtcacgt---ggtgctgtttattttaattaggggtgtg- |
295 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||| || |||||| |||||||||||| || |||||||||||||||||||||| ||||| |
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|
| T |
31454447 |
cctcacatccacaagtccttgatcaacaaaactgccaaagaatgatttctttgcttttgttgtcatgtggcggtgctgtttattttaattaggagtgtgt |
31454546 |
T |
|
| Q |
296 |
ttttttattatgacttgaattgacttcaaatgatagagatcacagtagggtagttttagaattttgaatgaatttatatggtagtgtataaatg |
389 |
Q |
| |
|
||||||||||||||||||||| |||| |||| || | ||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||| |
|
|
| T |
31454547 |
ttttttattatgacttgaattaacttgaaatcatggtgatcaaagtagggtagttttagaattttgaatgaattggtattgtagtgtgtaaatg |
31454640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 7 - 314
Target Start/End: Original strand, 17200219 - 17200533
Alignment:
| Q |
7 |
gacgtgtgggagcaacaactgcagtttatctggcatcaattctagagtatctgacatcgaaagttcttgagctagctggaaatgaaggttaagatttgaa |
106 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | ||||| | || | |||| ||||| | | |||||||| |
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| T |
17200219 |
gacgtgtgggagcaacagctgtagtttatctggcatcaattctagagtatctgactacagaagttttagaaccggctgaaaatgcaaccaatgatttgaa |
17200318 |
T |
|
| Q |
107 |
ggtgaagaggatcacaccaaggcatttgcagctggctattaggggagatgaggaac-------ccttatcaagggaacacttgttggtggtggtgtcatt |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||||| |
|
|
| T |
17200319 |
gttgaagaggatcacaccaaggcatttgcagctggctattaggggagatgaggaacttgatacccttgtcaagggaacaattgctggtggtggtgtcatt |
17200418 |
T |
|
| Q |
200 |
cctaacattcacaagtccttgatcaacaaaactgccaaagaacgagttctttacttttgttgtcacgtggtgctgtttattttaattaggggtgtgtttt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
17200419 |
cctaacattcacaagtccttgatcaacaaaactatcaaagaatgagttctttgcttttgttgtcatgtggtgttgtttattttaattaggggtgtgtttt |
17200518 |
T |
|
| Q |
300 |
ttattatgacttgaa |
314 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17200519 |
ttattatgacttgaa |
17200533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 6420 - 6692
Alignment:
| Q |
11 |
tgtgggagcaacaactgcagtttatctggcatcaattctagagtatctgacatcgaaagttcttgagctagctggaaatgaaggttaagatttgaaggtg |
110 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||||||||||||||||| || |||||||||| || ||||||||| | | |||||||||||||| |
|
|
| T |
6420 |
tgtgggagcaacgactgcagtttatccggcataaattctagagtatctgactgcggaagttcttgaactggctggaaattcaaataaagatttgaaggtg |
6519 |
T |
|
| Q |
111 |
aagaggatcacaccaaggcatttgcagctggctattaggggagatgagga-------acccttatcaaggg-aacacttgttggtggtggtgtcattcct |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || | || ||||||| || ||||||| |
|
|
| T |
6520 |
aagaggatcacaccaaggcagttgcagctggctattaggggagatgaggaacttgatacccttatcaagggaaaaaaatgctggtggttgtatcattcca |
6619 |
T |
|
| Q |
203 |
aacattcacaagtccttgatcaacaaaactgccaaagaacgagttctttacttttgttgtcacgtggtgctgt |
275 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||| |||||| |
|
|
| T |
6620 |
cacatccacaagtcctttatcaacaaaactgccaaagaatgagttctttgcttttgttgtcatgtgatgctgt |
6692 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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