View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_low_12 (Length: 396)
Name: NF18500_low_12
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 270 - 384
Target Start/End: Original strand, 21075430 - 21075550
Alignment:
| Q |
270 |
ggttcactttatatatctcttgaatgttt-----gttagaagatttaagataatagtggcatatgacagaaggccgagtcca-ttcgagtgtcataagaa |
363 |
Q |
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| T |
21075430 |
ggttcactctatatatctcttgaatgtttaatttgttcgaagatttaagataatagtggcatatgacagaaggccgagtccatttcgagtgtcataagaa |
21075529 |
T |
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| Q |
364 |
ttcaatacgacaacacaggtt |
384 |
Q |
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| T |
21075530 |
ttcaatacgacaacagaggtt |
21075550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 21074999 - 21075132
Alignment:
| Q |
33 |
gtctgaactacaattgaaaatt-taaaaattcattcaatatgtagttaagtgatagtataaatgctaggatcttggacgaagtaatagaattatgctttg |
131 |
Q |
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|||||||||||||| |||| || ||||||||| |||| ||| |||| ||||||||||||| ||||||||||| | || ||||||||||||||||||| | |
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| T |
21074999 |
gtctgaactacaatcgaaagttataaaaattccttcactatatagtaaagtgatagtatacatgctaggatcatcgatgaagtaatagaattatgctagg |
21075098 |
T |
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| Q |
132 |
aatcatcgatagcaaggtaaccgagtgtagtcat |
165 |
Q |
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| T |
21075099 |
aatcattgataacaaggtaaccatgtgtagtcat |
21075132 |
T |
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