View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_low_13 (Length: 382)
Name: NF18500_low_13
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 35374478 - 35374822
Alignment:
| Q |
20 |
atcaccatcaccatcaccatcactccctattttcttcaaacttcttccccatcataatattggttctgctgtttctcgtactacttatccactggattct |
119 |
Q |
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| T |
35374478 |
atcactatcaccatcaccatcactccctattttcttcacacttcttccccatcataatattggttctgctgtttctcgtactacttatccactggattct |
35374577 |
T |
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| Q |
120 |
aactcgccttcaaacaatgctgataaggcacgaagatacgaatacctcatgtcactattctaacgaccaattgcaaacacatgtcgtccacaacttagac |
219 |
Q |
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| T |
35374578 |
aactagccttcaaacaatgctgataaggcacgaagatacgaatacctcacgtcactattctaacgaccaattgcaaacacatgtcgtccacaacttagac |
35374677 |
T |
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| Q |
220 |
gagttggtcataaacaccatccccttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaag |
319 |
Q |
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| T |
35374678 |
gagttggtcagaaacaccatccccttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaag |
35374777 |
T |
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| Q |
320 |
acaataatgacattggtacactccctctttgttcccacagcttcc |
364 |
Q |
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| T |
35374778 |
acaataatgacattggtacactccctctttgttcccacagcttcc |
35374822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 35380949 - 35381068
Alignment:
| Q |
237 |
catccccttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaagacaataatgacattggt |
336 |
Q |
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| T |
35380949 |
catcctctcctccgtctacaacgctaaatatgcacaagaagaatttcaacgtgattgtgttatttgcttgaatgaatttgaagacaatgataccattgga |
35381048 |
T |
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| Q |
337 |
acactccctctttgttccca |
356 |
Q |
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| T |
35381049 |
acgctccctctttgttccca |
35381068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 35351663 - 35351723
Alignment:
| Q |
298 |
atttgcttggatgagtttgaagacaataatgacattggtacactccctctttgttcccaca |
358 |
Q |
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| T |
35351663 |
atttgcttggttgaatttgaaaacaatgattacattcgcaccctccctctttgttcccaca |
35351723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 35356797 - 35356857
Alignment:
| Q |
298 |
atttgcttggatgagtttgaagacaataatgacattggtacactccctctttgttcccaca |
358 |
Q |
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| T |
35356797 |
atttgcttggttgaatttgaaaacaatgattacattcgcactctccctctttgttcccaca |
35356857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 179 - 302
Target Start/End: Original strand, 30811863 - 30811986
Alignment:
| Q |
179 |
ctaacgaccaattgcaaacacatgtcgtccacaacttagacgagttggtcataaacaccatccccttctctgtctacactgctaagtatgcaaacgaaga |
278 |
Q |
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||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||| |||| |
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| T |
30811863 |
ctaacgaccaactgcaaacacatgtcgttcataacttagacgagttggtcataaataccatctccttctccatctacaccgctaagtatgcaaaagaagc |
30811962 |
T |
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| Q |
279 |
atctctacgtgattgtgttatttg |
302 |
Q |
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|| | |||| | ||||||||||| |
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| T |
30811963 |
atttgcacgttactgtgttatttg |
30811986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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