View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_low_14 (Length: 379)
Name: NF18500_low_14
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 53598279 - 53597931
Alignment:
| Q |
19 |
agtattagtattagtagtatcactctacctgcagtattaaaatattaaaattgtattgtgtaactgcagtttggttggtggctctatcgacattggtatg |
118 |
Q |
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| T |
53598279 |
agtattagtattagtagtatcactctacc---agtattaaaatattaaaattgtattgtgtaagtgcagtttggttggtggctctatcgacattggtatg |
53598183 |
T |
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| Q |
119 |
tataggactggagttcgaaccttgaatttactatttatcgacattggtataatgtgttagtgtagccactaaagtacttgatcaaaataaataaataaca |
218 |
Q |
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||||| | ||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53598182 |
tatagaattggggttcgaaccttaaatttactatttatc--catt--tataatgtgttagtgtagccactaaagtacttgatcaaaataaataattaaca |
53598087 |
T |
|
| Q |
219 |
ttcacgggggattgttcctcacaactactaaagcatgtgattcaacattttacaacacataatcaggttccaaccaaattcatatattaaaattcagtgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53598086 |
ttcacgggggattgttcctcacaactactaaagcatgtgattcaacattttacaacacataatcaggttccaaccaaattcatatattaaaattcagtgt |
53597987 |
T |
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| Q |
319 |
tctatacacacaagcactagaaatcatgaaatcccacttgctcctcctatgcttct |
374 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
53597986 |
tctatacacacaagcactagaaatcatgaaatcccatttgctcctcctctgcttct |
53597931 |
T |
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