View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18500_low_15 (Length: 378)

Name: NF18500_low_15
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18500_low_15
NF18500_low_15
[»] chr4 (2 HSPs)
chr4 (60-364)||(28731173-28731477)
chr4 (20-65)||(28731551-28731596)
[»] chr8 (6 HSPs)
chr8 (60-364)||(38121599-38121903)
chr8 (68-364)||(38608228-38608524)
chr8 (68-364)||(38793011-38793307)
chr8 (22-65)||(38121977-38122020)
chr8 (20-65)||(38608101-38608146)
chr8 (20-65)||(38792884-38792929)
[»] chr1 (2 HSPs)
chr1 (60-287)||(31529204-31529431)
chr1 (60-287)||(51801272-51801499)
[»] chr7 (1 HSPs)
chr7 (60-286)||(34875789-34876015)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 60 - 364
Target Start/End: Complemental strand, 28731477 - 28731173
Alignment:
Q  60 acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28731477 acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgttccgaatctcctccgtgaac 28731378  T
Q  160 acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| ||||||||    
T  28731377 acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaactgtcacttc 28731278  T
Q  260 cgagtcgattcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggtt 359  Q
    |||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28731277 cgagtcgattcatccgaacagcacttccggcggtgctccaaaagtattcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggtt 28731178  T
Q  360 gttgt 364  Q
    |||||    
T  28731177 gttgt 28731173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 28731596 - 28731551
Alignment:
Q  20 atgatcttcaagaacattcgttcttctcccacactgcattacttcc 65  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  28731596 atgatcttcaagaacattcgttcttctctcacactgcattacttcc 28731551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 60 - 364
Target Start/End: Complemental strand, 38121903 - 38121599
Alignment:
Q  60 acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac 159  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| |||||||    
T  38121903 acttcccctgcttggaccggtcctttcaccattttcgctccctctgatgcatcgcttcgcacttgcttttcttgctctgttccgaatctccttcgtgaac 38121804  T
Q  160 acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc 259  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| || |||||| |||||||||||||    
T  38121803 acatagttccaggtatattcaccatcgaatatcttcggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttc 38121704  T
Q  260 cgagtcgattcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggtt 359  Q
    |||||||||||||| ||||| ||||||| || ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38121703 cgagtcgattcatcagaacaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaatggtt 38121604  T
Q  360 gttgt 364  Q
    |||||    
T  38121603 gttgt 38121599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 68 - 364
Target Start/End: Original strand, 38608228 - 38608524
Alignment:
Q  68 tgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgtt 167  Q
    |||||||||||||||||  ||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  38608228 tgcttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgtt 38608327  T
Q  168 ccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcga 267  Q
    |||||| ||||||| ||||| ||| | ||    ||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||    
T  38608328 ccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcga 38608427  T
Q  268 ttcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgt 364  Q
    ||||| ||||||  ||| || |||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  38608428 ttcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgt 38608524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 68 - 364
Target Start/End: Original strand, 38793011 - 38793307
Alignment:
Q  68 tgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaacacatcgtt 167  Q
    |||||||||||||||||  ||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  38793011 tgcttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgtt 38793110  T
Q  168 ccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttccgagtcga 267  Q
    |||||| ||||||| ||||| ||| | ||    ||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||    
T  38793111 ccaggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcga 38793210  T
Q  268 ttcatccgaacagcacttccagcggtgctccgaaagtcttcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgt 364  Q
    ||||| ||||||  ||| || |||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  38793211 ttcattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgt 38793307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 38122020 - 38121977
Alignment:
Q  22 gatcttcaagaacattcgttcttctcccacactgcattacttcc 65  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
T  38122020 gatcttcaagaacattcgttcttctctcaaactgcattacttcc 38121977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 38608101 - 38608146
Alignment:
Q  20 atgatcttcaagaacattcgttcttctcccacactgcattacttcc 65  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||    
T  38608101 atgatcttcaagaacattcgttcttctctcacaccacattacttcc 38608146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 38792884 - 38792929
Alignment:
Q  20 atgatcttcaagaacattcgttcttctcccacactgcattacttcc 65  Q
    |||||||||||||||||||||||||||| |||||  ||||||||||    
T  38792884 atgatcttcaagaacattcgttcttctctcacaccacattacttcc 38792929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 60 - 287
Target Start/End: Complemental strand, 31529431 - 31529204
Alignment:
Q  60 acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac 159  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||    
T  31529431 acttcccctgcttggaccggtcctttcactattttcgctccctctgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaac 31529332  T
Q  160 acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc 259  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||| |||||||||||||    
T  31529331 acatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttc 31529232  T
Q  260 cgagtcgattcatccgaacagcacttcc 287  Q
    |||||||||||||||||||| |||||||    
T  31529231 cgagtcgattcatccgaacaacacttcc 31529204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 60 - 287
Target Start/End: Complemental strand, 51801499 - 51801272
Alignment:
Q  60 acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac 159  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| | ||| | | |||||| |||||||||| |||| ||||||||||||||||||    
T  51801499 acttcccctgcttggaccggtcctttcactattttcgctccctctgatacttcgcttcacacttgcttttcttgctgtgttccgaatctcctccgtgaac 51801400  T
Q  160 acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc 259  Q
    |||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||    
T  51801399 acatcgttccagatatattcaccatcaaatacctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaatcgtcacttc 51801300  T
Q  260 cgagtcgattcatccgaacagcacttcc 287  Q
    ||| |||||||||||||||| |||||||    
T  51801299 cgattcgattcatccgaacaacacttcc 51801272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 60 - 286
Target Start/End: Original strand, 34875789 - 34876015
Alignment:
Q  60 acttcccttgcttggaccggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgtttcgaatctcctccgtgaac 159  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||| |||||| ||| | | |||||| ||||||||||||||| ||||||||||||||||||    
T  34875789 acttcccctgcttggaccggtcctttcactatttttgctccctttgatgcttcgcttcacacttgcttttcttgctctgttccgaatctcctccgtgaac 34875888  T
Q  160 acatcgttccaggtatattcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcctggacgttgcataaccgtcacttc 259  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||| |||||||    
T  34875889 acatcgttccaggtatattcaccatcgaatatctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaaccatcacttc 34875988  T
Q  260 cgagtcgattcatccgaacagcacttc 286  Q
    |||||||||||||||||||| ||||||    
T  34875989 cgagtcgattcatccgaacaacacttc 34876015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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