View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_low_17 (Length: 356)
Name: NF18500_low_17
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 6867758 - 6867419
Alignment:
| Q |
18 |
aaaccttggtgttgtagaactcactgttgccctccattatgttttcaatgctcctattgacaaaatcttgtgggatgtaggtcatcaggttgatcatact |
117 |
Q |
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| T |
6867758 |
aaaccttggtgttgtggaactcactgttgccctccattatgttttcaatgctcctattgacaaaatcttgtgggatgtaggtcatcaggttgatcatact |
6867659 |
T |
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| Q |
118 |
actctcctattagtactaggtgattattttttgaagggttgactttctaggggatgatgacactt-gtgtgaatttttgcagtcatatccacataaaatt |
216 |
Q |
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| T |
6867658 |
actctcctattagtactagatgattattttttgaagggttgactttctaggggatgatatgactttgtgtgaatttttgcagtcatatccacataaaatt |
6867559 |
T |
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| Q |
217 |
ctgactggtagaaggaataagatgcatactttgaggcagaaagatggattaagtgggtttacaaaacgctctgagagtgaatttgatagttttggcactg |
316 |
Q |
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| T |
6867558 |
ctgactggtagaaggaataagatgcatactttgaggcagaaagatggattaagtgggtttacaaaacgctctgagagtgaatttgatatttttggcactg |
6867459 |
T |
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| Q |
317 |
gtcacagctcaacaacaatatcagcagggctaggtatttc |
356 |
Q |
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| T |
6867458 |
gtcacagctcaacaacaatatcagcagggctaggtatttc |
6867419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 190 - 329
Target Start/End: Original strand, 49145787 - 49145926
Alignment:
| Q |
190 |
tttttgcagtcatatccacataaaattctgactggtagaaggaataagatgcatactttgaggcagaaagatggattaagtgggtttacaaaacgctctg |
289 |
Q |
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| T |
49145787 |
tttttgcagtcataccctcataaaatacttactggtagaagggataagatgcataccatgagacagactaatggattgtctggatttacaaaacgttctg |
49145886 |
T |
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| Q |
290 |
agagtgaatttgatagttttggcactggtcacagctcaac |
329 |
Q |
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| T |
49145887 |
agagtgaatatgattcttttggcactggtcatagttcaac |
49145926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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