View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_low_23 (Length: 315)
Name: NF18500_low_23
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 35940765 - 35940979
Alignment:
| Q |
22 |
aatttgttaaaacttttcgagcctaggtaaacttttcaccactactatgaaaatgaagttatgtcatcaatcaaatattaactgataatctataaattct |
121 |
Q |
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| T |
35940765 |
aatttgttaaa-ctttttgagcctaggtaaacttttcaccactactatgaatatgaagttatgtcatcaatcaaatattaactgataatctataaattct |
35940863 |
T |
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| Q |
122 |
tcttatcttgtgtggtgttgtaaatttacttactaatgtaaatgtagttgcaatattcaggtctttgcaatcacatggtaactatattcctcctaaattt |
221 |
Q |
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| T |
35940864 |
tcttatcttgtgtggtgttgtaaatttacttactaatgcaaatgtagttgcaatattcaggtctttgcaatcacatggtaactatattcctcctaaattt |
35940963 |
T |
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| Q |
222 |
tcacaatctcaaggat |
237 |
Q |
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| T |
35940964 |
tcacaatctcaaggat |
35940979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 35915690 - 35915785
Alignment:
| Q |
61 |
cactactatgaaaatgaagttatgtcatcaatcaaatattaactgataatc----tataaattcttcttatcttgtgtggtgttgtaaatttactta |
153 |
Q |
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| T |
35915690 |
cactactatgaaaatgtagttatgtcatcaatcaaata-taactaataatctatatataaattctttttatcgtgtgtggtgatgcaaattttctta |
35915785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 35935223 - 35935318
Alignment:
| Q |
61 |
cactactatgaaaatgaagttatgtcatcaatcaaatattaactgataatctataaattcttcttatcttgtgtggtgttgtaaatttacttacta |
156 |
Q |
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| T |
35935223 |
cactactatgaaaatgaagttatgttatcgatcaaacattaagtagtaatcgatcaatacttcttatcatgtctggtgttgtatattggcttacta |
35935318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 35928667 - 35928716
Alignment:
| Q |
62 |
actactatgaaaatgaagttatgtcatcaatc-aaatattaactgataat |
110 |
Q |
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| T |
35928667 |
actactatgaaaatcaagttatgtcatcaatcaaaatattaactaataat |
35928716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 35922051 - 35922085
Alignment:
| Q |
61 |
cactactatgaaaatgaagttatgtcatcaatcaa |
95 |
Q |
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| T |
35922051 |
cactactatgaaaatgaacttatgtcatcaatcaa |
35922085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37882482 - 37882514
Alignment:
| Q |
1 |
tcactatctcttaatatccttaatttgttaaaa |
33 |
Q |
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| T |
37882482 |
tcactatctcttaatatccttaacttgttaaaa |
37882514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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