View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_low_25 (Length: 277)
Name: NF18500_low_25
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 15796871 - 15796680
Alignment:
| Q |
16 |
acaagagaataaattaaaaggcgagaaaattgtaagagaccaaattgagtctttactctttcatagcttataaaacaaaaaacaatttcaatcgtaggca |
115 |
Q |
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| T |
15796871 |
acaagagaataaattaaa-ggcgagaaaattgtaagagaccaaactgagtctttactctttcatagcttataaaacaatatacaatttcaatcgtaggca |
15796773 |
T |
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| Q |
116 |
tcacttacaacgattctacttaatttattacattaataaattgtttacaaataactcacacctcatgtcacatggtcagagagactaaacatg |
208 |
Q |
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| T |
15796772 |
tcacttacaacgattctacttaatttattacattaataaattgtttacaaataactcacatctcatgtcacatggtcagagagactaagcatg |
15796680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 15796546 - 15796482
Alignment:
| Q |
201 |
taaacatgataccagacttaatgactacatagtctttactctaacattaaacgagccctttgtta |
265 |
Q |
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| T |
15796546 |
taaacatgataccagacttaatgactacatagtctttactctaacattaaacgagccctttgtta |
15796482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 32046557 - 32046525
Alignment:
| Q |
36 |
gcgagaaaattgtaagagaccaaattgagtctt |
68 |
Q |
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| T |
32046557 |
gcgagaaaattgtaagagaccaaattgggtctt |
32046525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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