View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_low_29 (Length: 249)
Name: NF18500_low_29
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_29 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 29582433 - 29582192
Alignment:
| Q |
8 |
ccaagaaaatcagcagctgatttagccaaaatggtagcaaactcattgaaactaataacaccatcaccattgctatcagcttcagccatcatgttagcaa |
107 |
Q |
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| T |
29582433 |
ccaagaaaatcagcagctgatttagccaaaatggtagcaaactcattgaaactaataacaccatcaccattgctatcagcttcagccatcatgttagcaa |
29582334 |
T |
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| Q |
108 |
gctcatggtatgttagaggatggcccatctttgccatggatccggcaagctcagccgcggtgatgtaaccgttaccatcgcgatcaaacgagcgaaaaac |
207 |
Q |
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| T |
29582333 |
gctcatggtatgttagaggatggcccatctttgccatggatccggcaagctcagccgcggtgatgtaaccgttaccatcgcgatcaaacgagcgaaaaac |
29582234 |
T |
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| Q |
208 |
ctccaaaagttgttcttgattgatgagaacatcctcattcat |
249 |
Q |
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| T |
29582233 |
ctccaaaagttgttcttgattgatgagaacatcctcattcat |
29582192 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 46040970 - 46040907
Alignment:
| Q |
14 |
aaatcagcagctgatttagccaaaatggtagcaaactcattgaaactaataacaccatcaccat |
77 |
Q |
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| T |
46040970 |
aaatcagaagcagatcgagccataatagtagcaaactcactaaaactaataacaccatcaccat |
46040907 |
T |
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