View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18500_low_3 (Length: 529)
Name: NF18500_low_3
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_3 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 11 - 529
Target Start/End: Complemental strand, 39082835 - 39082317
Alignment:
| Q |
11 |
catcatcatctggagctagaaatctattgccttgactgaaaatagttggggacgaacttccaccgattgcatattgttgccaatgtgtataatcattgtt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082835 |
catcatcatctggagctagaaatctattgccttgactaaaaatagttggggacgaacttccaccaattgcatattgttgccaatgtgtataatcattgtt |
39082736 |
T |
|
| Q |
111 |
gaccacgtgaaagtatccgaacctgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcgaaataaagagtaaaaatatata |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39082735 |
gaccacatgaaagtatccgaacctgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcaaaataaagagtaaaaatatata |
39082636 |
T |
|
| Q |
211 |
acaaatggcaagtagggcttaattattgtggcagagaaaaattaactaatttacgaaccttggcattcttcccccaagcccttctccaaaatggttaaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082635 |
acaaatggcaagtagggcttaattattgtggcagagaaaaattaactaatttacaaaccttggcattcttcccccaagcccttctccaaaatggttaaaa |
39082536 |
T |
|
| Q |
311 |
gctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082535 |
gctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaa |
39082436 |
T |
|
| Q |
411 |
cagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatccc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082435 |
cagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatccc |
39082336 |
T |
|
| Q |
511 |
atcaccatccgatctttct |
529 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39082335 |
atcaccatccgatctttct |
39082317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 529
Target Start/End: Complemental strand, 31727458 - 31726954
Alignment:
| Q |
11 |
catcatcatctggagctagaaatctattgccttgactgaaaatagttggggacgaacttccaccgattgcatattgttgccaatgtgtataatcattgtt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31727458 |
catcatcatctggagctagaaatctattgccttgactaaaaatagttcgggacgaacttccaccgattgcatattgttgccaatgtgtgtaatcattgtt |
31727359 |
T |
|
| Q |
111 |
gaccacgtgaaagtatccgaacctgcacctgcaacatttgtgtagaaaaatattcaaactgttaggactaatctctcgaaataaagagtaaaaatatata |
210 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
31727358 |
caccacatgaaagtatccgaacctgcatctgcaacattcgtgtagaaaaaatttcaaactgttaggaataa--------------gagtaaaaatatata |
31727273 |
T |
|
| Q |
211 |
acaaatggcaagtagggcttaattattgtggcagagaaaaattaactaatttacgaaccttggcattcttcccccaagcccttctccaaaatggttaaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31727272 |
acaaatggcaagtagggcttaattactgtggcagagaaaaattaactaataaacctaccttggcattcttcccccaagcccttctccaaaatggttaaaa |
31727173 |
T |
|
| Q |
311 |
gctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaa |
410 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31727172 |
gctatagtagcttgcatatttttgtcctcttcataggaatcactatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaa |
31727073 |
T |
|
| Q |
411 |
cagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatccc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
31727072 |
cagccgttgatccatgaacaacatcaatgaaaccatcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatagattgtgatccc |
31726973 |
T |
|
| Q |
511 |
atcaccatccgatctttct |
529 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
31726972 |
atcaccatccgatctttct |
31726954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 438
Target Start/End: Complemental strand, 39076048 - 39075959
Alignment:
| Q |
349 |
atcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaat |
438 |
Q |
| |
|
|||||||||||| || |||||||| || |||||| | ||||| |||||||||||||||||| ||| || |||||||||| ||||||||| |
|
|
| T |
39076048 |
atcactatgacccaaaagcataaccttattatgatgagtcatgaaattattagaaatagtaatagctgtagatccatgaataacatcaat |
39075959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 486
Target Start/End: Original strand, 7593253 - 7593472
Alignment:
| Q |
267 |
accttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagag |
366 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| |||||||| |||||| ||||||| | ||||| | ||| ||||||||||| || || || |
|
|
| T |
7593253 |
accttggcattctttggacaagcccttcaccaaaatgattaaaagcaatagtaacttgcatgtccttgtcttgtgtataagaatcactatgtcccaaaag |
7593352 |
T |
|
| Q |
367 |
cataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaa |
466 |
Q |
| |
|
||||||||||| |||| | |||||||| ||||| |||||||||| ||| | |||||||| | ||||||||| | ||| ||| |||||| ||||| ||| |
|
|
| T |
7593353 |
cataactttgtcatgatgagtcatatagttatttgaaatagtaatagcattagatccatgtataacatcaataagaccatcacgacaattagacaaagaa |
7593452 |
T |
|
| Q |
467 |
caatgatccacccaaatatg |
486 |
Q |
| |
|
|||||||| | ||||||||| |
|
|
| T |
7593453 |
caatgatcaatccaaatatg |
7593472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 267 - 487
Target Start/End: Complemental strand, 43131564 - 43131344
Alignment:
| Q |
267 |
accttggcattcttcccccaagcccttctccaaaatggttaaaagctatagtagcttgcatatttttgtccccttcataggaatcactatgaccaaagag |
366 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||| || |||||||| |||||| ||||||| || ||||| ||| | |||||||||||| || || |
|
|
| T |
43131564 |
accttggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaacttgcatgttcttgtcttgagtataagtatcactatgacccaaaag |
43131465 |
T |
|
| Q |
367 |
cataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccgtcaaaacaatttgacaaggaa |
466 |
Q |
| |
|
||||||||| | ||| | ||||||||||| ||||| || |||| || || || ||||||| | ||||||||||||| ||| ||| || ||||| ||| |
|
|
| T |
43131464 |
cataactttatcatggtgagtcatataattgttagagatggtaattgcagtggacccatgaatagcatcaatcaaaccatcattacagttagacaaagaa |
43131365 |
T |
|
| Q |
467 |
caatgatccacccaaatatga |
487 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
43131364 |
caatgatccacccaaacatga |
43131344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University