View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_low_30 (Length: 243)
Name: NF18500_low_30
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_30 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 26 - 243
Target Start/End: Complemental strand, 15797640 - 15797421
Alignment:
| Q |
26 |
aatgtcaaatacctgtccaccggtgtcagaatctcgaccaagctccatgttttctcccctaaccaatccatgcaaactgttgaataaaagggcagggtta |
125 |
Q |
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| T |
15797640 |
aatgtcaaatacctgtccaccggtgtcagaatctcgaccaagctccatgttttctcccctaaccaatccatgcaaactgttgaataaaagaaaaaggtta |
15797541 |
T |
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| Q |
126 |
tagcattagcaattattaaacttccacacatttctagagttcatttccagatgtacttcacatcattagtgataaa--agaatgaaactatattctaaaa |
223 |
Q |
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| T |
15797540 |
tagcattagcaactattaagttttcacacatttctagagttcatttccagaagcacttcacatcattagtgataaaacaaaatgaaactatattctaaaa |
15797441 |
T |
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| Q |
224 |
cataaatggttaaaattcca |
243 |
Q |
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| T |
15797440 |
cataaatggttaaaattcca |
15797421 |
T |
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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 39810263 - 39810177
Alignment:
| Q |
19 |
atgtaggaatgtcaaatacctgtccaccggtgtcagaatctcgaccaagctccatgttttctcccctaaccaatccatgcaaactgt |
105 |
Q |
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| T |
39810263 |
atgtatgaatatcaagtacctgtccaccagtatcagaatctctaccaagctccatgttttctcctcgtaccaatccatgcaaactgt |
39810177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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