View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18500_low_31 (Length: 242)
Name: NF18500_low_31
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 36021174 - 36021375
Alignment:
| Q |
25 |
agaagttttatatatatgaatgaaaagtttcattcaagtaagaaaactcagaatttgacagcaatgggagagaaaagaaactttgacccgcgtgagatta |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36021174 |
agaagttttatatatatgaatgaaaagtttcattcaagtaagaaaactcagaatttgacaccaatgggagagaatagaaactttgacccgcgtgagatta |
36021273 |
T |
|
| Q |
125 |
ctatgaatccatgacaataataagactttataaataagcacaaaaaatagtaaaatatcacgacttgccacatcataaagcctaagaataccatgaataa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36021274 |
ctatgaatccatgacaataataagactttataaataagtagaaaaaatagtaaaatatcacgacttgccacatcataaagcctaagaataccatgaataa |
36021373 |
T |
|
| Q |
225 |
aa |
226 |
Q |
| |
|
|| |
|
|
| T |
36021374 |
aa |
36021375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 35997881 - 35997965
Alignment:
| Q |
67 |
aaaactcagaatttgacagcaatgggagagaaaagaaactttgacccgcgtgagattactatgaatccatgacaataataagact |
151 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35997881 |
aaaactcagaatttgacaccaatgggagagaaaagaaactttgacccgcgtgagattagtatgaatccatgacaataataagact |
35997965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 35998212 - 35998269
Alignment:
| Q |
169 |
aaatagtaaaatatcacgacttgccacatcataaagcctaagaataccatgaataaaa |
226 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
35998212 |
aaatagaaaaatgtcacgacttgcaacatcgtaaagcctaagaataccatgaataaaa |
35998269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University