View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_low_35 (Length: 236)
Name: NF18500_low_35
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 46643173 - 46643395
Alignment:
| Q |
1 |
ttggagcagttgaatgtggcacataataaattttctggtgttattcctgagagtatatgtagattgccaaggttggagaatttgacgtattcgtataatt |
100 |
Q |
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| T |
46643173 |
ttggagcagttgaatgtggcacataataaattttctggtgttattcctgagagtatatgtagattgccaaggttgaagaatttaacgtattcgtataatt |
46643272 |
T |
|
| Q |
101 |
actttagtggtgaatcagagatttgtgttaagttgggtgataaggatgatacaaagaattgtattcctcatatgcatttccaaagatcgagtcatgggtg |
200 |
Q |
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|| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46643273 |
acctgagtggtgaatcagagatttgtgttaagttggatgataaggatgatacaaagaattgtattcctcatatgcatttccaaagatcgagtcatgggtg |
46643372 |
T |
|
| Q |
201 |
tgatgctttttatgaacatcctg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
46643373 |
tgatgctttttatgaacatcctg |
46643395 |
T |
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