View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18500_low_36 (Length: 232)

Name: NF18500_low_36
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18500_low_36
NF18500_low_36
[»] chr3 (2 HSPs)
chr3 (5-95)||(43921796-43921886)
chr3 (46-92)||(26565523-26565570)
[»] chr8 (1 HSPs)
chr8 (5-95)||(18602922-18603012)
[»] chr7 (2 HSPs)
chr7 (26-92)||(10678514-10678583)
chr7 (32-92)||(45215897-45215960)
[»] chr1 (1 HSPs)
chr1 (26-90)||(23432095-23432162)
[»] chr6 (2 HSPs)
chr6 (46-92)||(17540240-17540287)
chr6 (32-92)||(19294552-19294615)


Alignment Details
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 43921796 - 43921886
Alignment:
Q  5 ttttctttgattcgacatttataggaccggtgtccgacacctataacactcatcgaaccgtttcggacaactcagacaaatatctaaagca 95  Q
    |||||||| |||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43921796 ttttctttaattcaacactcctaggaccggtgtccgacacctataacactcatcgaaccgtttcggacaactcagacaaatatctaaagca 43921886  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 26565570 - 26565523
Alignment:
Q  46 tataacactcat-cgaaccgtttcggacaactcagacaaatatctaaa 92  Q
    |||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  26565570 tataacactcatacgagccgtgtcggacaactcagacaaatatctaaa 26565523  T

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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 18602922 - 18603012
Alignment:
Q  5 ttttctttgattcgacatttataggaccggtgtccgacacctataacactcatcgaaccgtttcggacaactcagacaaatatctaaagca 95  Q
    ||||||||||||||||| |  || |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  18602922 ttttctttgattcgacactcctaagaccggtgtccgacacctataaaactcatcgaactgtttcggacaactcagacaaatatctaaagca 18603012  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 10678583 - 10678514
Alignment:
Q  26 taggaccggtgtccgacacctata--acactcat-cgaaccgtttcggacaactcagacaaatatctaaa 92  Q
    |||||| |||||||||||||||||  |||||||| |||||||| || |||||||||||||||||| ||||    
T  10678583 taggactggtgtccgacacctatataacactcatacgaaccgtgtctgacaactcagacaaatatttaaa 10678514  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 45215897 - 45215960
Alignment:
Q  32 cggtgtccgacacctat--aacactcat-cgaaccgtttcggacaactcagacaaatatctaaa 92  Q
    |||||||||||||||||  ||||||||| ||| |||| ||||||||| ||| ||||||||||||    
T  45215897 cggtgtccgacacctatgtaacactcatacgagccgtgtcggacaacccagtcaaatatctaaa 45215960  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 23432162 - 23432095
Alignment:
Q  26 taggaccggtgtccgacacctata--acactcat-cgaaccgtttcggacaactcagacaaatatcta 90  Q
    ||||||||||||||||||| ||||  |||||||| ||| |||| |||||||||||||| |||||||||    
T  23432162 taggaccggtgtccgacacttatataacactcatacgagccgtgtcggacaactcagataaatatcta 23432095  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 17540287 - 17540240
Alignment:
Q  46 tataacactcatc-gaaccgtttcggacaactcagacaaatatctaaa 92  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  17540287 tataacactcatatgaaccgtgtcggacaactcagacaaatatctaaa 17540240  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 19294615 - 19294552
Alignment:
Q  32 cggtgtccgacacct--ataacactcat-cgaaccgtttcggacaactcagacaaatatctaaa 92  Q
    |||||||||||||||  ||||||||||| ||| |||| |||||||| ||| |||||||||||||    
T  19294615 cggtgtccgacacctgtataacactcatacgagccgtgtcggacaagtcacacaaatatctaaa 19294552  T

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