View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_low_4 (Length: 514)
Name: NF18500_low_4
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 17 - 496
Target Start/End: Complemental strand, 39081308 - 39080820
Alignment:
| Q |
17 |
catgatgagaagaataaatcaaaactggagcaagaagcaagaaatggaacactagtatggtagcaaatgccatattttt-ggaagaaattttttcttaag |
115 |
Q |
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| T |
39081308 |
catgatgagaagaataaatcaaaactggagcaagaagcaagaaatggaacactagtatggtagcaaatgccatattttttggaagaaattttttcttaag |
39081209 |
T |
|
| Q |
116 |
taggaaacttaaagagtagtgacttgttctataagagtgatataattagcttatatagacaactaactgtggtgagaggatcctgaatttatgatttaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39081208 |
taggaaacttaaagagtagtgacttgttctataagagtgatataattagcttatatagacaactaactgtggtgagaggatcctgaatttattatttaaa |
39081109 |
T |
|
| Q |
216 |
aaatatgtttatcaaatgttatttgtcaatttagggaccctatagttaattccctatatatgaggcatctttcttcc-aaggtcaactcatacacggtta |
314 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39081108 |
aaatatgtttatcaaatgttatttgtgaatttagggaccctatagttaattccctatatatgaggcatctttcttccaaaggtcaactcatacacggtta |
39081009 |
T |
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| Q |
315 |
aggagctcgatagtataccattacataaataactgattaattggttaacaaattttccttttc---aggagttaggaggacattattaattagaaaatat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39081008 |
aggagctcgatagtataccattacataaataactgattaattagttaacaaattttccttttcaggaggagttaggaggacattattaattagaaaatat |
39080909 |
T |
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| Q |
412 |
agtaataaagaaaaagaattacaacacaataaaatttgagc----tgagttttctgtctttatataagaaagtaccctttggagatgac |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39080908 |
agtaataaagaaaaagaattacaacacaataaaatttgagctatatgagttttctgtctttatataagaaagtaccctttggagatgac |
39080820 |
T |
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