View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18500_low_40 (Length: 210)
Name: NF18500_low_40
Description: NF18500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18500_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 31255186 - 31255010
Alignment:
| Q |
18 |
gaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgattactttgatcgaacaaagt |
117 |
Q |
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| T |
31255186 |
gaaaccttctcactggatcggtgcctgcttggaaaaagaacatcgacgtgtaagttattgttctaatactacttgtatgattactttgatcgaacaaagt |
31255087 |
T |
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| Q |
118 |
acttcagttatcatgcggtaatactataaacgtatcatccgttatttcttttacctttctaagttaactttgccttt |
194 |
Q |
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| T |
31255086 |
acttcagttatcatgtggtaatactataaacgtatcatccgttatttcttttacctttctaagttaactttgccttt |
31255010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 31292169 - 31292099
Alignment:
| Q |
18 |
gaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatacta |
88 |
Q |
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| T |
31292169 |
gaaaccttctcactggatcggtgcctgcttggaaaaagaacgttgacgtgtaagttatttttctactacta |
31292099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 38837189 - 38837365
Alignment:
| Q |
18 |
gaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgattactttgatcgaacaaagt |
117 |
Q |
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| T |
38837189 |
gaaaccttcttactggatcggtacctgcttggaaaaagaacatcgacgtgtaagttcttgttctaatattacttatataattactttgatcgaacaaagt |
38837288 |
T |
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| Q |
118 |
acttcagttatcatgcggtaatactataaacgtatcatccgttatttcttttacctttctaagttaactttgccttt |
194 |
Q |
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| T |
38837289 |
acttcagttatcatgcggtaatactgtaaacgtatcatccgttatttattttacttttctaagttaactttgtcttt |
38837365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 3300527 - 3300707
Alignment:
| Q |
18 |
gaaaccttcttactggatcggtgcctgcttggaaaaagaacattgacgtgtaagttattgttctaatactacttgtatgattactttgatcgaacaaagt |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
3300527 |
gaaaccttcttactggatcggtacctgcttggaaaaagaacatcgacgtgtaagttcttgttctaatattacttgtataattactttgatcgaacaaagt |
3300626 |
T |
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| Q |
118 |
acttcagttatcatgcggtaatactataaacgtatcatccgttatttc----ttttacctttctaagttaactttgccttt |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
3300627 |
acttcagttatcatgcggtaatactataaacgtatcatccgttatttaaatattttacttttctaagttaactttgtcttt |
3300707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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