View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18501_high_4 (Length: 561)
Name: NF18501_high_4
Description: NF18501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18501_high_4 |
 | |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 2 - 551
Target Start/End: Complemental strand, 30653147 - 30652599
Alignment:
| Q |
2 |
aatcttttatggcatgtttgtagatggtgctttcccactagatctcaatggcatgcattgtttcgttgattgtgtgctttgtggaagtaattatgaagat |
101 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30653147 |
aatcttgtatggcatgtttgtagagggtgctttcccactagatctcaatggcatgcattgtttcgttgattgtgtgctttgtggaagtaattatgaagat |
30653048 |
T |
|
| Q |
102 |
aatattcataatcttttatagtgtcatgtgatatgcatatttggcgagaggttaatttatgggacaagattgacaaggtattaaggcaaaactataacat |
201 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
30653047 |
aatattcgtagtcttttatagtgtcatgtgatatgcatatttggcgagaggttaatttatgggataagattgacagggtattaaggcaaaactataacat |
30652948 |
T |
|
| Q |
202 |
ggatgcggtgatttttagccttttgtctcaacttaatatgtctcaaagttctctctttgccacaatcttgtggagtatttggaagcgtatgaacttaagt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
30652947 |
ggatgcggtgatttttagccttttgtctcaacttaatatgtcttaaagttctctctttgccacaatcttgtggagtatttggaagcgtaggaacttaagt |
30652848 |
T |
|
| Q |
302 |
tatggcaacagaaaacataaaacaatggtcaggtttaagctcgagcaacgaccctcctcaatgagtggaaggctacacaaggcattagaagagagggtgg |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
30652847 |
tatggcaacagaaaacataaaacaatggtcaggttttaactcgagcaacgaccctcctcaatgagtggaagcctacacaaggcattagaagagagggtgg |
30652748 |
T |
|
| Q |
402 |
cgcacctagaactgtgaatcaattggaaccaatacgccaagaggttgttcgataggaaaagctagcaaaaggtcgatacaaatgtaacatagatgtttcc |
501 |
Q |
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|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30652747 |
cgcacctagaactgtgaatcagcagaaaccaatacgccaagaggttgttcgataggaaaagccagcaaaaggtcgatacaaatgtaacatagatgtttcc |
30652648 |
T |
|
| Q |
502 |
ttttcttgttcacttaatcatgtgggtattaagtatgtgtatctgtgatg |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
30652647 |
ttttcttgttcacttaatcatgtgggtatt-agtatgtgtatctgggatg |
30652599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 39649558 - 39649518
Alignment:
| Q |
67 |
ttgattgtgtgctttgtggaagtaattatgaagataatatt |
107 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| |||| |
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|
| T |
39649558 |
ttgattgtgttctttgtggtagtaattatgaagatagtatt |
39649518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 51 - 528
Target Start/End: Complemental strand, 14857812 - 14857333
Alignment:
| Q |
51 |
ggcatgcattgtttcgttgattgtgtgctttgtggaagtaattatgaagataatattcataatcttttatagtgtcatg-tgatatgcatatttggcgag |
149 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||| ||| ||| |||||| || |||| ||||| ||||||||| |
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|
| T |
14857812 |
ggcatgcattgtcctgtcgattgtgtactttgtggaagtaattttgaagataatattcatattctcttagagtgtcctggtgatgtgcatctttggcgag |
14857713 |
T |
|
| Q |
150 |
aggttaatttatgggacaagattgacaaggtattaaggcaaaactataacatggatgcggtgatttttagccttttgtctcaacttaatatgtctcaaag |
249 |
Q |
| |
|
|||||||||||| ||| |||||||| | || ||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
14857712 |
aggttaatttataggataagattgagagggcattaaggaaaacttataacatggatgcaatgatttttagcctcttgtctcaacttaatccgtctcaaag |
14857613 |
T |
|
| Q |
250 |
ttctctctttgccacaatcttgtggagtatttggaagcgtatgaa-cttaagttatggcaacagaaaacataaaacaatggtcaggtttaagctcgagca |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||| | | |||| |||| ||| |||||||||| |
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|
| T |
14857612 |
ttctctctttgccacaatcttgtggagtatttggaaacgaatgaaccttaagttatggcaacaaaagacagagaccaatagtcaagttgtagctcgagca |
14857513 |
T |
|
| Q |
349 |
acgaccctcctcaatgagtggaaggctacacaaggcattagaagagagggtggcgcacctagaactgtgaatcaattggaaccaatacgccaagaggttg |
448 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| |||| ||||||||||| || ||||||||| |||||||||| ||| ||||| || |||||| | |
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|
| T |
14857512 |
acgaccctccttgatgagtggaaggccgcacaatgcataagaagagagggaggtgcacctagagctgtgaatcagccggagccaattcgacaagagacta |
14857413 |
T |
|
| Q |
449 |
ttcgataggaaaagctagcaaaaggtcgatacaaatgtaacatagatgtttccttttcttgttcacttaatcatgtgggt |
528 |
Q |
| |
|
|||||| | |||||| ||||| |||||| |||||||| || ||||||| ||||||||||| ||||||||||| ||||||| |
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|
| T |
14857412 |
ttcgatggcaaaagccagcaagaggtcgctacaaatgcaatatagatgcttccttttcttcttcacttaatcgtgtgggt |
14857333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 12715675 - 12715638
Alignment:
| Q |
66 |
gttgattgtgtgctttgtggaagtaattatgaagataa |
103 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
12715675 |
gttgattgtgttctttgtggtagtaattatgaagataa |
12715638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 12776906 - 12776869
Alignment:
| Q |
66 |
gttgattgtgtgctttgtggaagtaattatgaagataa |
103 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
12776906 |
gttgattgtgttctttgtggtagtaattatgaagataa |
12776869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 51 - 503
Target Start/End: Original strand, 10214698 - 10215150
Alignment:
| Q |
51 |
ggcatgcattgtttcgttgattgtgtgctttgtggaagtaattatgaagataatattcataatcttttatagtgtcatg-tgatatgcatatttggcgag |
149 |
Q |
| |
|
|||||||||||| ||||||||||||| | ||| ||||||||| ||||||||||||||||| ||||||| ||||||||| || ||||||||||||| ||| |
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|
| T |
10214698 |
ggcatgcattgtcccgttgattgtgtgttgtgtagaagtaattttgaagataatattcatattcttttagagtgtcatggtgctatgcatatttggagag |
10214797 |
T |
|
| Q |
150 |
aggttaatttatgggacaagattgacaaggtattaaggcaaaactataacatggatgcggtgatttttagccttttgtctcaacttaatatgtctcaaag |
249 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| ||||||||||| || |||||||||| |||| ||||||||| |
|
|
| T |
10214798 |
aggttaatttatgggataagattgacaaggcattaaggctaaactataacatggatgctgtgatttttagtctcttgtctcaacctaatccgtctcaaag |
10214897 |
T |
|
| Q |
250 |
ttctctctttgccacaatcttgtggagtatttggaagcgtatgaacttaagttatggcaacagaaaacataaaacaatggtcaggtttaagctcgagcaa |
349 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||| |||| | | |||||||||||||| | | ||||| |||||||| |||||||||| |
|
|
| T |
10214898 |
ttctctctttgccacaatcttgtggagcatttgaaaacgtaagaacctta-ttatggcaacagaaggtggagaccaatgatcaggttttagctcgagcat |
10214996 |
T |
|
| Q |
350 |
cgaccctcctcaatgagtggaaggctacacaaggcattagaagagagggtggcgcacctagaactgtgaatcaattggaaccaatacgccaagaggttgt |
449 |
Q |
| |
|
|||||||||| | ||||| | |||| | ||| | || ||||||| |||||| | |||| | ||||||||| ||| ||||| | ||||||||||| |
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|
| T |
10214997 |
cgaccctccttgaggagtgaatggctgcgcaatgtatccgaagagaaggtggcacgcctatagatgtgaatcagccggagacaatatgacaagaggttgt |
10215096 |
T |
|
| Q |
450 |
tcgataggaaaagctagcaaaaggtcgatacaaatgtaacatagatgtttcctt |
503 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
10215097 |
tcgatgggaaaagctagcaaaaggccgatacaaatgtaatatagatgattcctt |
10215150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 95 - 269
Target Start/End: Complemental strand, 24663006 - 24662833
Alignment:
| Q |
95 |
tgaagataatattcataatcttttatagtgtcatgtgatatgcatatttggcgagaggttaatttatgggacaagattgacaaggtattaaggcaaaact |
194 |
Q |
| |
|
|||||||| |||||||| |||||| | |||| ||| |||| ||||||||||||||||||||||||||||||||||||| | || ||| |||||||||| |
|
|
| T |
24663006 |
tgaagatagtattcatattcttttggattgtcc-gtgctatgaatatttggcgagaggttaatttatgggacaagattgatagggcattgaggcaaaact |
24662908 |
T |
|
| Q |
195 |
ataacatggatgcggtgatttttagccttttgtctcaacttaatatgtctcaaagttctctctttgccacaatct |
269 |
Q |
| |
|
||||||||||| |||||||||| |||||||| | |||||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
24662907 |
ttaacatggatgtagtgatttttaaccttttgtattaacttaatccgtctcaaagtgctctttttgccacaatct |
24662833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 445 - 544
Target Start/End: Complemental strand, 8321564 - 8321466
Alignment:
| Q |
445 |
gttgttcgataggaaaagctagcaaaaggtcgatacaaatgtaacatagatgtttccttttcttgttcacttaatcatgtgggtattaagtatgtgtatc |
544 |
Q |
| |
|
|||||||||| | ||||| ||||| |||||||||||||||||||||| ||||||| ||||||| |||| |||||| ||| |||||| ||||||||||| |
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|
| T |
8321564 |
gttgttcgatggaaaaagtcagcaagaggtcgatacaaatgtaacataaatgtttcattttcttcttcaattaatcgtgtcggtatt-ggtatgtgtatc |
8321466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 27526981 - 27527081
Alignment:
| Q |
190 |
aaactataacatggatgc-ggtgatttttagccttttgtctcaacttaat---at--gtctcaaagttctctctttgccacaatcttgtggagtatttgg |
283 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||| || | |||||||| |||| ||||||||||| || |||||||||||| |
|
|
| T |
27526981 |
aaactataacatggatgccggtgatttttagccttttgt-tcaacttaatccgatccgcctcaaagtgctctgtttgccacaatattttggagtatttgg |
27527079 |
T |
|
| Q |
284 |
aa |
285 |
Q |
| |
|
|| |
|
|
| T |
27527080 |
aa |
27527081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 88591 - 88634
Alignment:
| Q |
67 |
ttgattgtgtgctttgtggaagtaattatgaagataatattcat |
110 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
88591 |
ttgattgtgttctttgtggtagtaattatgaagatagtattcat |
88634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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