View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18501_low_1 (Length: 752)
Name: NF18501_low_1
Description: NF18501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18501_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 256 - 738
Target Start/End: Original strand, 42227304 - 42227762
Alignment:
| Q |
256 |
gggagaatctcagtattgggtattccccctattgtacacaagcatgtagaataattattaaaggagagagtagtgattgnnnnnnnnnnnnnnnnnnnng |
355 |
Q |
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| T |
42227304 |
gggagaatctcggtattgggtattccccctgttgtacacaagcatgtagaataattattaaaggagagagtagtgattgaaaagaaaaaaaaaa-----g |
42227398 |
T |
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| Q |
356 |
ggaaataaaactttgggacatatatagaacgcagaaacaaagagttgagtattctttatttgagcatgtaatgcaaagaaaaatgacataattgaataaa |
455 |
Q |
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| T |
42227399 |
ggaaataaaactttgggacata----gaacgcagaaacaaagagttgagtattctttatttgagcatgtaatggaaagaaaaatgacataattgaataaa |
42227494 |
T |
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| Q |
456 |
aagagtgaagagaaagaattatttagtattcggtattcccatttgcttaacaatatagaaacaaatgaagaggcatactttgtgtaagttgttgtattga |
555 |
Q |
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| T |
42227495 |
aagagtgaagagaaagaattatt--------------cccatttgcttaacaatatagaaacaaatgaagaggcatactttgtgtcagttggtgtat-ga |
42227579 |
T |
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| Q |
556 |
cttttgagcatatgatttggcaaccctttatagaagatgagtactattttcatgctatgatgttgggtccaaactaattttgttgtatgagttcgaatat |
655 |
Q |
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| T |
42227580 |
cttttgagcatatgatttggcaaccctttatagaagatgagtacaattttcctgctatgatgttgggtccaaactaattttgttgtatgagttcgaatat |
42227679 |
T |
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| Q |
656 |
ctcttgtgctccctttaataaaaagtttgcttatcgaaaataactcatatttgtatagctccctcagtcacaacttccctttg |
738 |
Q |
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| T |
42227680 |
ctcttgtactccctttattaaaaagtttgcttatcgaaaataactcatatttgtatagctccctcagtcacaacttccctttg |
42227762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 42227066 - 42227238
Alignment:
| Q |
68 |
atggcggaaggttcagggaggaagctaatggtagaaatcatcaatgcaaatcatttgacagaaaaatattcactcttgcgaccaaaatagnnnnnnnctt |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
42227066 |
atggcggaaggttcagggaggaagctaatggtagaaatcatcaatgcaaatcatttgacagaaaaatattcactcttgcgaccaaagtagtttttttctt |
42227165 |
T |
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| Q |
168 |
acttgaattnnnnnnntaaattaacaattatttaccaatannnnnnnaataattctgcagcaatgaatggttg |
240 |
Q |
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| T |
42227166 |
acttgaattaaaaaaataaattaacaattatttaccaatatttttttaataattctgcagcaatgaatggttg |
42227238 |
T |
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