View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18501_low_10 (Length: 277)
Name: NF18501_low_10
Description: NF18501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18501_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 30973251 - 30973501
Alignment:
| Q |
11 |
atgaacaagtgtttataattgaaagcgaattttacctcacaaattgattttgggagaatgaattatctctggtataaaaatctaaggtgatattaaaacc |
110 |
Q |
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| T |
30973251 |
atgaacaattgtttataagtgaaagcgaattttacctcacaaattgattttaggagaatgaattatctctagtataaaaatctaaggtgatattaaaacc |
30973350 |
T |
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| Q |
111 |
tcttccaagatctattttgatcgaaccacctaccatttatatctatgcatcaagtctaatagtattggatgcgataggctgcgttaaatactatcatatt |
210 |
Q |
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| T |
30973351 |
ttttccaagatctgtcttgatcgaaccacctaccatttatatctatgcatcaagtctaatagtattggatgcgataggctgtgttaaatactatcatatt |
30973450 |
T |
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| Q |
211 |
tgatgaaaaatgacataaacaagtgtttctaaatatggataaccatcatct |
261 |
Q |
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| T |
30973451 |
tgatgaaaaatgacataaacaagtgtttctaaatatggataaccatcatct |
30973501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 32352901 - 32352949
Alignment:
| Q |
130 |
atcgaaccacctaccatttatatctatgcatcaagtctaatagtattgg |
178 |
Q |
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| T |
32352901 |
atcgaacaacccaccatttttatccatgcatcaagtctaatagtgttgg |
32352949 |
T |
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