View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18501_low_11 (Length: 244)
Name: NF18501_low_11
Description: NF18501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18501_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 14353857 - 14353651
Alignment:
| Q |
21 |
gtacagaaaatgtacaactgtcttatagttagttcaatttcttattaatgtaataattagtcaatcttttaaaataaagtataagacataataatctttc |
120 |
Q |
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| T |
14353857 |
gtacagaaaatgtacaactgtcttatagttagttcaatttcttattaatgtaataattagtcaatcttttaaaataaagtataagacataataatctttc |
14353758 |
T |
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| Q |
121 |
tcttattccatggacccaaaataaaatgatcaatggacgtttgcctgatacgtaaagctaattttttacctttctgcaaaatatagttcactatgtaatg |
220 |
Q |
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| T |
14353757 |
tcttattccatggacccaaaataaaatgatcaatggacatttgcctgatacgtaaagctaattttttacctttctgcaaaatatagttcactatgtaatg |
14353658 |
T |
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| Q |
221 |
tatgtac |
227 |
Q |
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||||||| |
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| T |
14353657 |
tatgtac |
14353651 |
T |
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Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 3005613 - 3005779
Alignment:
| Q |
30 |
atgtacaactgtcttatagttagttcaatttcttattaatgtaataattagtcaatcttttaaaataaagtataagacataataatctttctcttattcc |
129 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
3005613 |
atgtacaactgtcttatagttggttcaatttcttattaatgtaataattagtcaatcttttaaaatagagtataagacataatactctttctcttattct |
3005712 |
T |
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| Q |
130 |
atggacccaaaataaaatgatcaatggacgtttgcctgatacgtaaagctaattttttacctttctg |
196 |
Q |
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|||| ||| ||| || || |||||| || ||||||||||||||||||||| |||||||| |||||| |
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| T |
3005713 |
atggcccccaaaaaatattatcaatcaacatttgcctgatacgtaaagctagttttttacttttctg |
3005779 |
T |
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