View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18501_low_5 (Length: 452)
Name: NF18501_low_5
Description: NF18501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18501_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 12 - 435
Target Start/End: Complemental strand, 56535429 - 56535007
Alignment:
| Q |
12 |
cagagagaaaaaaccttcaaaatgataaattcctgagttatgaattttcaatttattctctctttaacttactcaattgattctacatctactttcttaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56535429 |
cagagagaaaaaaccttcaaaatgataaattcc-gagttatgaattttcaatttattctctctttaacttactcaattgattctacatctactttcttaa |
56535331 |
T |
|
| Q |
112 |
tccaagacattattactatgatacaatggtataatagtattatttgcaaataatattaactttaacatccttgccaaattcaatcaaatgcattttacac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56535330 |
tccaagacattattactatgatacaatggtataatagtattattcgcaaataatattaactttaacatccttgccaaattcaatcaaatgcattttacac |
56535231 |
T |
|
| Q |
212 |
aaattttcagcacttacccacagtttatactttgagcaattcttgtcatttcagtccaacagaaaacatatagaaacatagaaaatcaagtaataacaat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56535230 |
aaattttcagcacttacccacagtttatactttgagcaattcttgtcatttcagtccaacagaaaacatatagaaacatagaaaatcaagtaataacaat |
56535131 |
T |
|
| Q |
312 |
aaaaaatcaatgcattcatttgggggaatttctaatcatgcaaaacaacctaatttatttatgttatctcactcaatttcacaaaatcaaacccaagggc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56535130 |
aaaaaatcaatgcattcatttgggggaatttctaatcatgcaaaacaacctaatttatttatgttatctcactcaatttcacaaaatcaaacccaagggc |
56535031 |
T |
|
| Q |
412 |
agtactacactaacaggaactcac |
435 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
56535030 |
agtactacactaacaggaactcac |
56535007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 53 - 435
Target Start/End: Original strand, 27265353 - 27265738
Alignment:
| Q |
53 |
gaattttcaatttattctctctttaacttactcaattgattctacatctactttcttaatccaagacattattactatgatacaatggtataatagtatt |
152 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | | || |
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|
| T |
27265353 |
gaattttcaatctattctttctttaacttactcaattgattctacatctactttcttagtctaagacattattactatgatacaatggtataacaatgtt |
27265452 |
T |
|
| Q |
153 |
atttgcaaataatattaactttaacatccttgccaaattcaatcaaatgcattt-tacacaaattttcagcacttacccacagtttatactttgagcaat |
251 |
Q |
| |
|
||| |||| |||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || |||||||||||||||| |
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|
| T |
27265453 |
attcgcaagtaatgtgaactttaacatccttgccaaattcaatcaaatgcatttctacacaaattttcagcactttcccgcatattatactttgagcaat |
27265552 |
T |
|
| Q |
252 |
tcttgtcatttcagtccaacagaaaacatatagaaacatagaaaatcaagtaataacaat--aaaaaatcaatgcattcatttgggggaatttctaatca |
349 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
27265553 |
tcttgtcatttcagtccaacataaaacatatagaaacatagaaaatcacgtaataacaataaaaaaaatcaatgcattcatttgggggaatttctaatca |
27265652 |
T |
|
| Q |
350 |
tgcaaaacaacctaatttatttatgttatctcactcaatttcacaaaatcaaacccaagggcagtactacactaacaggaactcac |
435 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||| |||| ||||| |||||| |||||||||||||||||||||||| |
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|
| T |
27265653 |
tgcaaaataacctaatttttttatgttatctcactcaatttcataaaaccaaactcaagggtagtactacactaacaggaactcac |
27265738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 53 - 435
Target Start/End: Complemental strand, 22694606 - 22694219
Alignment:
| Q |
53 |
gaattttcaatttattctctctttaacttactcaattgattctacatctactttcttaatccaagacattattactatgatacaatggtataatagtatt |
152 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||| ||| || |
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|
| T |
22694606 |
gaattttcaatctattctttctttaacttactcaattgattctacatctactttcttaatctat-agagtattactatgatacaatggtataacagtgtt |
22694508 |
T |
|
| Q |
153 |
atttgcaaataatattaactttaacatccttgccaaattcaatcaaatgcattt-tacacaaattttcagcacttacccacagtttatactttgagcaat |
251 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | |||| ||||||| | |||| |||||||||||||||| |
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|
| T |
22694507 |
attcgcaaataatattaactttaacatccttgccaaatttaatcaaatgcatttctacaaatttttttagcactttcacacatattatactttgagcaat |
22694408 |
T |
|
| Q |
252 |
tcttgtcatttcagtccaacagaaaacatatagaaacatagaaaatcaagtaataacaataaaa-----aatcaatgcattcatttgggggaatttctaa |
346 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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|
| T |
22694407 |
tcttatcatttcagtccgacagaaaacatatagaaacatagaaaatcaagtaataacaataaaataaaaaatcaatgcattcatttgggggaatttttaa |
22694308 |
T |
|
| Q |
347 |
tcatgcaaaacaacctaatttatttatgttatctcactcaatttcacaaaatcaaacccaagggcagtactacactaacaggaactcac |
435 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
22694307 |
tcatgcaaaataacctaatttttttatgttatctcactcaatttcataaaatcaaactcaagggtagtactacactaacaggaactcac |
22694219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 23611485 - 23611564
Alignment:
| Q |
72 |
tctttaacttactcaattgattctacatctac-tttcttaatccaagacattattactatgatacaatggtataatagta |
150 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||| |||||||||| ||||||||||||| |||| | ||| |||||| |||| |
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|
| T |
23611485 |
tctttcacttactcaattgatcatacttctacatttcttaatctaagacattattaccatgacataatagtataaaagta |
23611564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 23842881 - 23842960
Alignment:
| Q |
72 |
tctttaacttactcaattgattctacatctac-tttcttaatccaagacattattactatgatacaatggtataatagta |
150 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||| |||||||||| ||||||||||||| |||| | ||| |||||| |||| |
|
|
| T |
23842881 |
tctttcacttactcaattgatcatacttctacatttcttaatctaagacattattaccatgacataatagtataaaagta |
23842960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 33641552 - 33641614
Alignment:
| Q |
141 |
tataatagtattatttgcaaataatattaactttaacatccttgccaaattcaatcaaatgca |
203 |
Q |
| |
|
||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33641552 |
tataaaagtaatattcacaaataagattaactttaacatccttgccaaattcaatcaaatgca |
33641614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 33641474 - 33641520
Alignment:
| Q |
57 |
tttcaatttattctctctttaacttactcaattgattctacatctac |
103 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
33641474 |
tttcaatctattctttctttcacttactcaattgattctacatctac |
33641520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 40068764 - 40068848
Alignment:
| Q |
67 |
ttctctctttaacttactcaattgattctacatctac-tttcttaatccaagacattattactatgatacaatggtataatagta |
150 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||| ||||| |||||||||| | ||||||||||| |||| | ||| |||||| |||| |
|
|
| T |
40068764 |
ttctttctttcacttactcaattgatcatacttctacatttcttaatctatgacattattaccatgacataatagtataaaagta |
40068848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 24640480 - 24640553
Alignment:
| Q |
78 |
acttactcaattgattctacatctac-tttcttaatccaagacattattactatgatacaatggtataatagta |
150 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||| ||||||||||||| |||| | ||| |||||| |||| |
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|
| T |
24640480 |
acttactcaattgatcatacttctacatttcttaatctaagacattattaccatgacataatagtataaaagta |
24640553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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