View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18501_low_6 (Length: 445)
Name: NF18501_low_6
Description: NF18501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18501_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 11903157 - 11902728
Alignment:
| Q |
1 |
cttgaaaagttgcaaaagaaattaactgaatctggcggtaccagttgggcaatactcatcactacacgtagcaactatgtcgccgataatatttctgttg |
100 |
Q |
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| T |
11903157 |
cttgaaaagttgcaaaagaaattaactgaatctggcggtaccagttgggcaatactcatcactacacgtagcaactatgtcgccgataatatttctgttg |
11903058 |
T |
|
| Q |
101 |
ccaggtatgttttgaaagggcttaacagacatgaatctcaattgttattccaacaaattcgtgggccaacttcaacttcaaccaacaacaaacaagacaa |
200 |
Q |
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| T |
11903057 |
ccaggtatgttttgaaagggcttaacagacatgaatctcaattgttattccaacaaattcgtgggcaaacttcaacctcaaccaacaacaaacaagacaa |
11902958 |
T |
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| Q |
201 |
catcgaatgggaactcgtgaaggattgtggtggagtccctcttgcgattgtgaccgtagcaatgttgatgaagaaccaaagtgctggtggtgtttcaatt |
300 |
Q |
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| T |
11902957 |
catcgaatgggaactcgtgaaggattgtggtggagtccctcttgcgattgtgaccgtagcaatgttgatgaagaaccaaagtgctggtggtgtttcaatt |
11902858 |
T |
|
| Q |
301 |
ttggcagcagaccaaatagcagaagtggagaggaagtttctacaagagctcaagtttatgtattacaaggatcttccaatgcttcacaagttatgttttg |
400 |
Q |
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| T |
11902857 |
ttggcagcagaccaaatagcagaagtggagaggaagtttctacaagagctcaagtttatgtattacaaggatcttccaatgcttcacaagttatgttttg |
11902758 |
T |
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| Q |
401 |
catattgttcattgtttccaagagattatt |
430 |
Q |
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| T |
11902757 |
catattgttcattgtttccaagagattatt |
11902728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 11731226 - 11731301
Alignment:
| Q |
170 |
cttcaacttcaaccaacaacaaacaagacaacatcgaatgggaactcgtgaaggattgtggtggagtccctcttgcgat |
248 |
Q |
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| T |
11731226 |
cttcaacttcaaccaacaacaaacaagacaa---cggattggagattgtgaaggattgtgggggagtgcctcttgcgat |
11731301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 11731348 - 11731412
Alignment:
| Q |
313 |
caaatagcagaagtggagaggaagtttctacaagagctcaagtttatgtattacaaggatcttcc |
377 |
Q |
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| T |
11731348 |
caaatagaagacgtggagagggagtttctaaacgagctcaagtttagatattacgaggatcttcc |
11731412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 11731081 - 11731119
Alignment:
| Q |
37 |
ggtaccagttgggcaatactcatcactacacgtagcaac |
75 |
Q |
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| T |
11731081 |
ggtaccggttgtgcaatactcatcactacacgtagcaac |
11731119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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