View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18501_low_9 (Length: 298)
Name: NF18501_low_9
Description: NF18501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18501_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 176 - 282
Target Start/End: Complemental strand, 37442325 - 37442219
Alignment:
| Q |
176 |
catggattgaggatagaaatggtagtggatttgttgtctctgcagataataattaacttatctgttgtgtagaggattaggaccagtgaagactttcctc |
275 |
Q |
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| T |
37442325 |
catggattgaggatagaaatggtagtggatttgttgtctctgcagataataattaacttatctgttgtgtagaggattaggaccagtgaagactttcctc |
37442226 |
T |
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| Q |
276 |
ttgttat |
282 |
Q |
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||||||| |
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| T |
37442225 |
ttgttat |
37442219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 37442490 - 37442370
Alignment:
| Q |
12 |
tcatcatgcataagacttcaccnnnnnnngaataaaactatattctcatcatcatcatcaatattaaacctatacactcatactgctcaaaaaatatgct |
111 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37442490 |
tcatcatgcataagacttcaccaaaaaaagaataaaactatattctcatcatcatcatcaatattaaacctatatactcatactgctcaaaaaatatgct |
37442391 |
T |
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| Q |
112 |
tccaaagtgtaatatatgaag |
132 |
Q |
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| T |
37442390 |
tccaaagtgtaatatatgaag |
37442370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 34940106 - 34940013
Alignment:
| Q |
180 |
gattgaggatagaaatggtagtggatttgttgtctctgcagataataattaacttatctgttgtgtagaggattaggaccagtgaagactttcctctt |
277 |
Q |
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||||||||| |||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||| ||||||||| | ||||||||||| |
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| T |
34940106 |
gattgaggacagaaatggatgtggatttgttgtctctacaggtaa----caacttatctgttgtgtagaggatttggaccagtgtacactttcctctt |
34940013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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