View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18502_high_6 (Length: 416)
Name: NF18502_high_6
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_high_6 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 400
Target Start/End: Original strand, 5853656 - 5854049
Alignment:
| Q |
13 |
aatataataaggactcgtggattgaatgcaattatatgtgttagtgtcatgtcagtgatgaacgctaacacatgtcagacattagacatgacttcagtat |
112 |
Q |
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| T |
5853656 |
aatataataaggactcgtggattgaatgcaattatatgtgttagtgtcatgtcagtgatgaacgctaacacatgtcagacattagacatgacttcagtat |
5853755 |
T |
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| Q |
113 |
gaaatgccagtgctacataagtatagatgaattgaacctacgacctcgaggtccaaaggcaacaaccttatcgttgcgtcaaggctaacactcaatagtt |
212 |
Q |
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| T |
5853756 |
gaagtgccagtgctacataagtatagatgaattgaacctacgacctcgaggtcaaaaggaaacaaccttatcgttgcgtcaaggctaacccccaataatt |
5853855 |
T |
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| Q |
213 |
tgatttaagtattagggaaaataattttacttaataaaaactaaggggaaaa-------taagaagcattagttacccaatcaagcatggctcctttttg |
305 |
Q |
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| T |
5853856 |
tgattcaagtatta-ggaaaaaaaaattaattaataaaaactaaggggaaaataagaactaagaagcattagttacccaatcaagcatggctcctttttg |
5853954 |
T |
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| Q |
306 |
gttagctgcttttccaaattctaaggctctctgacctgtgattaactcaaggagaagaatgccgaacccaaacacatcagtcttctcggaggatt |
400 |
Q |
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| T |
5853955 |
gttagctgcttttccaaattctaaggctctctgacctgtgattaactcaaggagaagaatgccgaacccaaacacatcagtcttctcggaggatt |
5854049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 389
Target Start/End: Original strand, 6211834 - 6211946
Alignment:
| Q |
277 |
gttacccaatcaagcatggctcctttttggttagctgcttttccaaattctaaggctctctgacctgtgattaactcaaggagaagaatgccgaacccaa |
376 |
Q |
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| T |
6211834 |
gttacccaatcaagcatgactcctttttggttggctgcttttccaaattcaagggccctcaaacctgtgatcaattcaagaagcaaaatgccaaatccaa |
6211933 |
T |
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| Q |
377 |
acacatcagtctt |
389 |
Q |
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| T |
6211934 |
aaacatcagtctt |
6211946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 400
Target Start/End: Complemental strand, 59560 - 59438
Alignment:
| Q |
278 |
ttacccaatcaagcatggctcctttttggttagctgcttttccaaattctaaggctctctgacctgtgattaactcaaggagaagaatgccgaacccaaa |
377 |
Q |
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| T |
59560 |
ttacccaatcaagcatagctcctttctggttagcagctttcccaaattcaagagctctttgtccagaaatcaattcaagcagaagaattccaaatccaaa |
59461 |
T |
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| Q |
378 |
cacatcagtcttctcggaggatt |
400 |
Q |
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| T |
59460 |
tacatctgttttctctgaggatt |
59438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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