View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18502_low_1 (Length: 648)
Name: NF18502_low_1
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 583; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 20 - 644
Target Start/End: Complemental strand, 17408475 - 17407854
Alignment:
| Q |
20 |
catacttttcgacatttcccaaaatcacacgagttagaccaagcaatatcttatcgaccatccaaattggtaaccttttcatcaacataacagctacctc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17408475 |
catacttttcgacatttcccaaaatcacacgagttagaccaagcaatatcttatcgaccatccaaattggtaaccttttcatcaacataacagctacctc |
17408376 |
T |
|
| Q |
120 |
ataagttgattttccgaatatttccctcggtaagacatgaacctattaatcaaaaatcacaaaaaataaagatggtcacaatctatacacgtaaaaatgc |
219 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17408375 |
ataagttgattttccgaatatttccctcggtaacacatgaacctattaatcaaaaatcacaaaaaataaagatggtcacaatctatacacataaaaatgc |
17408276 |
T |
|
| Q |
220 |
aaagtatgaatcaagattaacataattaatcaaagtaattaatttttgtttaagtactcaccgagcttcgaacgaccattgatggatttgcattatggtt |
319 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
17408275 |
aaacaatgaatcaagattaacat---taatcaaagtaattaatttttgtttaagtactcaccgaacttcgaacaaccattgatggatttgcattatggtt |
17408179 |
T |
|
| Q |
320 |
acaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttccactataattcacaccagatttatagtcacaagcatgc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17408178 |
acaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttccactataattcacaccagatttatagtcacaagcatgc |
17408079 |
T |
|
| Q |
420 |
ataacatttccaccaaaatcactcaaaccttcaaattccggcacaactttctccgagttttcaccggtagcaaccacaagccacctacaaatatattcaa |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17408078 |
ataacatttccaccaaaatcactcaaaccttcaaattccggcacaactttctccgagttttcaccggtagcaaccacaagccacctacaaatatactcaa |
17407979 |
T |
|
| Q |
520 |
cttcaacaactttatcactttttatcctattgctcttaatcctccaaagaccaaaggtttcatcatacttagcagaaagcactgtttcattgaaatttgg |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17407978 |
cttcaacaactttatcactttttatcctattgctcttaatcctccaaagaccaaaggtttcatcatacttagcagaaagcactgtttcattgaaatttgg |
17407879 |
T |
|
| Q |
620 |
tgttatgttaaagtttttcgcatat |
644 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
17407878 |
tgttatgttaaagtttttcgcatat |
17407854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 423
Target Start/End: Original strand, 29857465 - 29857580
Alignment:
| Q |
308 |
tgcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttccactataattcacaccagatttatag |
407 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||| |||||||| ||||| |||||||| | ||| || || || ||| || | |||| |||||||| |
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| T |
29857465 |
tgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaactttcacctgatttataa |
29857564 |
T |
|
| Q |
408 |
tcacaagcatgcataa |
423 |
Q |
| |
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||||||||||| |||| |
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|
| T |
29857565 |
tcacaagcatgaataa |
29857580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 524
Target Start/End: Original strand, 29857640 - 29857684
Alignment:
| Q |
480 |
tcaccggtagcaaccacaagccacctacaaatatattcaacttca |
524 |
Q |
| |
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||||| ||||||||||||||| ||||||||||||| ||||||||| |
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| T |
29857640 |
tcaccagtagcaaccacaagcgacctacaaatatactcaacttca |
29857684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 888402 - 888460
Alignment:
| Q |
309 |
gcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaac |
367 |
Q |
| |
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|||| ||| ||||||||||| | | |||||||||| || |||||||||||||||||||| |
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| T |
888402 |
gcatcatgattacaaagatccaaacaaacttccatacctgaatttccacatccaacaac |
888460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 39733423 - 39733482
Alignment:
| Q |
323 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
382 |
Q |
| |
|
||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
39733423 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
39733482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 524
Target Start/End: Original strand, 39733577 - 39733624
Alignment:
| Q |
477 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
524 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
39733577 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39733624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 524
Target Start/End: Complemental strand, 39839381 - 39839334
Alignment:
| Q |
477 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
524 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
39839381 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39839334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 39839535 - 39839476
Alignment:
| Q |
323 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
382 |
Q |
| |
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||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
39839535 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
39839476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 50667920 - 50667862
Alignment:
| Q |
309 |
gcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaac |
367 |
Q |
| |
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|||| ||||||||||||||| | | |||||||||| |||||||| ||||| |||||||| |
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| T |
50667920 |
gcatcatggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaac |
50667862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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