View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18502_low_10 (Length: 321)

Name: NF18502_low_10
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18502_low_10
NF18502_low_10
[»] chr4 (13 HSPs)
chr4 (13-304)||(48871397-48871688)
chr4 (13-304)||(48876701-48876992)
chr4 (15-304)||(48887083-48887372)
chr4 (148-270)||(48146951-48147069)
chr4 (85-230)||(48864854-48864998)
chr4 (149-230)||(48170202-48170283)
chr4 (90-299)||(45371122-45371326)
chr4 (126-223)||(37826079-37826177)
chr4 (145-230)||(48155594-48155679)
chr4 (206-263)||(48167417-48167474)
chr4 (133-166)||(7772912-7772945)
chr4 (145-182)||(48864171-48864208)
chr4 (187-248)||(49038053-49038113)
[»] chr8 (1 HSPs)
chr8 (51-251)||(15349743-15349930)
[»] chr5 (1 HSPs)
chr5 (94-194)||(9120640-9120740)
[»] chr1 (4 HSPs)
chr1 (131-182)||(24311106-24311157)
chr1 (126-182)||(24341318-24341374)
chr1 (126-182)||(24353683-24353739)
chr1 (100-168)||(24367996-24368064)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 48871688 - 48871397
Alignment:
Q  13 aaaatcagagaacaaacagaacctttttgttcgtgatttcaaatttttaaagaagcgctttgagtcaaagtggtgtaattgtgattttgatcttgtttaa 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48871688 aaaatcagagaacaaacagaacctttttgtttgtgatttcaaatttttaaagaagcgctttgagtcaaagtggtgtaattgtgattttgatcttgtttaa 48871589  T
Q  113 catgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagctcaatccaattatacattcacaaataac 212  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48871588 catgcaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagctcaatccaattacacattcacaaataac 48871489  T
Q  213 attgaatcacacagacaattaaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatattaaataa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48871488 attgaatcacacagacaattaaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatattaaataa 48871397  T

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Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 48876992 - 48876701
Alignment:
Q  13 aaaatcagagaacaaacagaacctttttgttcgtgatttcaaatttttaaagaagcgctttgagtcaaagtggtgtaattgtgattttgatcttgtttaa 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48876992 aaaatcagagaacaaacagaacctttttgtttgtgatttcaaatttttaaagaagcgctttgagtcaaagtggtgtaattgtgattttgatcttgtttaa 48876893  T
Q  113 catgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagctcaatccaattatacattcacaaataac 212  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48876892 catgcaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagctcaatccaattacacattcacaaataac 48876793  T
Q  213 attgaatcacacagacaattaaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatattaaataa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48876792 attgaatcacacagacaattaaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatattaaataa 48876701  T

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Target: chr4; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 48887372 - 48887083
Alignment:
Q  15 aatcagagaacaaacagaacctttttgttcgtgatttcaaatttttaaagaagcgctttgagtcaaagtggtgtaattgtgattttgatcttgtttaaca 114  Q
    |||||| ||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48887372 aatcagggaacaaacagaacctttttgtttctggtttcaaatttttaaagaagcgctttgagtcaaagtggtgtaattgtgattttgatcttgtttaaca 48887273  T
Q  115 tgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagctcaatccaattatacattcacaaataacat 214  Q
    ||  |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  48887272 tgctaaaattcatcaaactaatttaccatgaaaaacaatttcaagcagtgaccaaaacatgcattagagctcaatccaattacacattcacaaataacat 48887173  T
Q  215 tgaatcacacagacaattaaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatattaaataa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||    
T  48887172 tgaatcacacagacaattaaagttgtcaacattttcaataaacatataataaacagctaagcaattaacagttcataacatattaaataa 48887083  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 270
Target Start/End: Original strand, 48146951 - 48147069
Alignment:
Q  148 aacaatttcaagcagtgaccaaaacatacattagagctcaatccaattatacattcacaaataacattgaatcacacagacaattaaagttgtcaacatt 247  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||| ||| |||| || |||||||| |||||||| || ||    |||||||||||||||    
T  48146951 aacaatttcaggcagtgaccacaacatacattagaactcaatccagttacacatgcataaataacactgaatcacgcaaac----aaagttgtcaacatt 48147046  T
Q  248 ttcaataaacatattataaatag 270  Q
    | ||| ||||||| || ||||||    
T  48147047 tccaagaaacatactacaaatag 48147069  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 230
Target Start/End: Complemental strand, 48864998 - 48864854
Alignment:
Q  85 gtgtaattgtgattttgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagc 184  Q
    ||||||||||||||||||||||| | |||||| ||| ||| | |||| ||| |||| || ||||||||||||||||||  | || ||||||||||||| |    
T  48864998 gtgtaattgtgattttgatcttgatcaacatgcaaacattcagcaaa-taaattacaatataaaacaatttcaagcagcaaacagaacatacattagaac 48864900  T
Q  185 tcaatccaattatacattcacaaataacattgaatcacacagacaa 230  Q
     ||||||| ||| |||| || |||||||| ||| ||||||| ||||    
T  48864899 ccaatccagttacacatgcataaataacaatgattcacacaaacaa 48864854  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 48170202 - 48170283
Alignment:
Q  149 acaatttcaagcagtgaccaaaacatacattagagctcaatccaattatacattcacaaataacattgaatcacacagacaa 230  Q
    |||||||| ||||||||||| ||||||||||||  ||||||||| ||| |||| || |||||||| ||||||||||| ||||    
T  48170202 acaatttctagcagtgaccacaacatacattagcactcaatccagttacacatgcataaataacagtgaatcacacaaacaa 48170283  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 299
Target Start/End: Original strand, 45371122 - 45371326
Alignment:
Q  90 attgtgattttgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagctcaat 189  Q
    |||||||| ||||||||| | |||||| | ||||| || ||| ||| ||||  | |||||||||||| | |||||| || ||||||||||||| ||||||    
T  45371122 attgtgatcttgatcttgatcaacatgcataaattcataaaa-taaattacattataaaacaatttctaacagtgatcacaacatacattagaactcaat 45371220  T
Q  190 ccaattatacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttca 289  Q
    |||| || |||| || |||||| | ||||||||||| ||    | |||||||||  ||| ||| || ||||||| ||| |  ||| ||||||||| ||||    
T  45371221 ccaactacacatgcataaataaaagtgaatcacacaaac----agagttgtcaaagtttccaagaagcatattacaaacaattaatcaataaacatttca 45371316  T
Q  290 taacatatta 299  Q
    | ||||||||    
T  45371317 tgacatatta 45371326  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 37826079 - 37826177
Alignment:
Q  126 atcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatac-attagagctcaatccaattatacattcacaaataacattgaatcaca 223  Q
    |||||| ||||||||||| |||||| ||||||  ||||||| ||||||||| |||||| ||||||||||||| | || || |||||||| |||| ||||    
T  37826079 atcaaattaatttaccatataaaaccatttcagacagtgacaaaaacatacaattagaactcaatccaattacatatgcataaataacaatgaaacaca 37826177  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 48155594 - 48155679
Alignment:
Q  145 taaaacaatttcaagcagtgaccaaaacatacattagagctcaatccaattatacattcacaaataacattgaatcacacagacaa 230  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||||||| | | ||||  | ||||| || ||||||||||| ||||    
T  48155594 taaaacaatttcaagcaatgaccacaacatacattagaactcaatccagtgacacatgtataaatatcagtgaatcacacaaacaa 48155679  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 48167417 - 48167474
Alignment:
Q  206 aaataacattgaatcacacagacaattaaagttgtcaacattttcaataaacatatta 263  Q
    |||| ||| ||||||||||||||| ||||||||||||| |||| ||| ||||||||||    
T  48167417 aaattacagtgaatcacacagacatttaaagttgtcaatatttccaacaaacatatta 48167474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 7772912 - 7772945
Alignment:
Q  133 taatttaccatgtaaaacaatttcaagcagtgac 166  Q
    ||||||||||| ||||||||||||||||||||||    
T  7772912 taatttaccatataaaacaatttcaagcagtgac 7772945  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 48864208 - 48864171
Alignment:
Q  145 taaaacaatttcaagcagtgaccaaaacatacattaga 182  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  48864208 taaaacaatttcaagcagtgaccacaacattcattaga 48864171  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 49038053 - 49038113
Alignment:
Q  187 aatccaattatacattcacaaataacattgaatcacacagacaattaaagttgtcaacattt 248  Q
    |||||||||| |||| || |||||||||  | ||||||| ||||||||||||||||||||||    
T  49038053 aatccaattacacatgcataaataacatata-tcacacaaacaattaaagttgtcaacattt 49038113  T

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Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 51 - 251
Target Start/End: Complemental strand, 15349930 - 15349743
Alignment:
Q  51 tcaaatttttaaagaagcgctttgagtcaaagtggtgtaattgtgattttgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaac 150  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| ||||||    
T  15349930 tcaaatttttaaagaagcgcctcgagtcaaagtggtgtaattgtgattttgatcttgtttaatatgcaaaaactcatcaaactaatttaccatataaaac 15349831  T
Q  151 aatttcaagcagtgaccaaaacatacattagagctcaatccaattatacattcacaaataacattgaatcacacagacaattaaagttgtcaacattttc 250  Q
     ||||||| ||| |||||||||||             ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15349830 gatttcaaacagcgaccaaaacat-------------atccaattacacattcacaaataacgttgaatcacacagacaattaaagttgtcaacattttc 15349744  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 9120740 - 9120640
Alignment:
Q  94 tgattttgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattagagctcaatccaa 193  Q
    |||||||||||||| || ||||| | ||| | || | ||||||||||||  |||||||||||||||||||  ||| | ||||||| ||| ||||||||||    
T  9120740 tgattttgatcttgattgacatgcataaactcatgagactaatttaccaaataaaacaatttcaagcagttgccacatcatacatcagaactcaatccaa 9120641  T
Q  194 t 194  Q
    |    
T  9120640 t 9120640  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 24311157 - 24311106
Alignment:
Q  131 actaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattaga 182  Q
    ||||||||||||||||||| ||||||||||||||| || ||||| |||||||    
T  24311157 actaatttaccatgtaaaataatttcaagcagtgaacacaacatgcattaga 24311106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 24341374 - 24341318
Alignment:
Q  126 atcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattaga 182  Q
    |||| ||||||||||||| || ||||||||||||| |||| || |||||||||||||    
T  24341374 atcagactaatttaccatatagaacaatttcaagctgtgaacacaacatacattaga 24341318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 24353739 - 24353683
Alignment:
Q  126 atcaaactaatttaccatgtaaaacaatttcaagcagtgaccaaaacatacattaga 182  Q
    |||| ||||||||||||| || ||||||||||||| |||| || |||||||||||||    
T  24353739 atcagactaatttaccatatagaacaatttcaagctgtgaacacaacatacattaga 24353683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 24368064 - 24367996
Alignment:
Q  100 tgatcttgtttaacatgaaaaaatttatcaaactaatttaccatgtaaaacaatttcaagcagtgacca 168  Q
    |||||||| | |||||| | ||| | |||||||||||||||||| ||||||||||||||  ||||||||    
T  24368064 tgatcttgatcaacatggataaactcatcaaactaatttaccatataaaacaatttcaaatagtgacca 24367996  T

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