View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18502_low_11 (Length: 319)
Name: NF18502_low_11
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 302
Target Start/End: Complemental strand, 15172643 - 15172356
Alignment:
| Q |
15 |
aatatcaatacaaggaacaaacttcgaataacatgataatggtaccgcgtgatcacaaatcgaataatagattctctgcctcagattccaacagtagact |
114 |
Q |
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| T |
15172643 |
aatatcaatacaaggaacaaacttcgaataacataataatcgtaccgcgtgatctcaaatcgaataatagattctctgcctcagattccaacagtagtct |
15172544 |
T |
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| Q |
115 |
tcctaatgattcgaatatatttgatatagattttgaagatgcaagctctctaatgtctatatttttcaacacatccgaaatatgtgcaccttgcagtcac |
214 |
Q |
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| T |
15172543 |
tcctaatgattcgaatatatttgatatagatttcgaagatgcaagctctctaatgtctatatttttcaacacatccgaaatatgtgcaccttgcagtcac |
15172444 |
T |
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| Q |
215 |
tttcacaaagttgttgctcctcaatagtatcctctctagaaatccacaattgtttcctctcatttgttagttcctcttgtcttgttga |
302 |
Q |
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| T |
15172443 |
tttcacaaagttgttgctcctcaatagtatcctctctagaaatccacaattgtttcctctcatttgttagttcctcttgtcttgttga |
15172356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 31458318 - 31458197
Alignment:
| Q |
98 |
gattccaacagtagacttcctaatgattcgaatatatttgatatagattttgaagatgcaagctctctaatgtctatatttttcaacacatccgaaatat |
197 |
Q |
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| T |
31458318 |
gattccagcagtagccttcccaatgattggaatatatttgatatagattttgcagatttaagctttgttatgtctatatttttcaacacgtccaaaatct |
31458219 |
T |
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| Q |
198 |
gtgcaccttgcagtcactttcaca |
221 |
Q |
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| T |
31458218 |
gtg--tcttgcggtcactttcaca |
31458197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 31448019 - 31447909
Alignment:
| Q |
85 |
attctctgcctcagattccaacagtagacttcctaatgattcgaatatatttgatatagattttgaagatgcaagctctctaatgtctatatttttcaac |
184 |
Q |
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|||||| || || ||||||| ||||| |||||||| ||| ||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| |
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| T |
31448019 |
attctccgcatctgattccagcagtaaccttcctaacaattggaatatatttgatataggttttgccgatgtaagcttttccatgtctatatttttcaac |
31447920 |
T |
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| Q |
185 |
acatccgaaat |
195 |
Q |
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| T |
31447919 |
acgtccaaaat |
31447909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 1522852 - 1522722
Alignment:
| Q |
89 |
tctgcctcagattccaacagtagacttcctaatgattcgaatatatttgatatagattttgaagatgcaagctctctaatgtctatatttttcaacacat |
188 |
Q |
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||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||| |||| |||| |||||| | |||||||| | |||| |
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| T |
1522852 |
tctgcctcagatttcaactgtagccttcctaatgattttaatatatttgatatagattttgaa---gcaaactctgtaatgtttgtatttttcgaaacat |
1522756 |
T |
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| Q |
189 |
ccgaaatatgtgcaccttgcagtcactttcacaaag |
224 |
Q |
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| T |
1522755 |
ccgaaatctgt--tccttgcgatcactttcacaaag |
1522722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 1522159 - 1522098
Alignment:
| Q |
235 |
tcaatagtatcctctctagaaatccacaattgtttcctctcatttgttagttcctcttgtct |
296 |
Q |
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| T |
1522159 |
tcaatggtatcctctctagaaatccacgatcgtttcctctcaattgttagttcctcttgtct |
1522098 |
T |
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