View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18502_low_12 (Length: 313)
Name: NF18502_low_12
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 51578556 - 51578850
Alignment:
| Q |
1 |
aaagcaagaaatcgaacttaaaagcaataggtcaattaatgggtgttcctagatctgaaattagaactgggtacaaagcatgtgtatttttaaaaactag |
100 |
Q |
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| T |
51578556 |
aaagcaagaaatcgaacttaaaagcaataggtcaattaatgggtgttcctagatctgaaattagaaccgggtacaaagcatgtgtatttttaaaaactag |
51578655 |
T |
|
| Q |
101 |
aagagaaaaaatgttcgacaaacataacaaatgaaaataatcataagtaaaatgattaaaatgagattttcgaaaaacttctttttactagtagttcacg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51578656 |
aagagaaaaaatgttcgacaaacataacaaatgaaaataatcataagtaaaatgattaaaatgagattttccaaaaacttctttttactagtagttcacg |
51578755 |
T |
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| Q |
201 |
gggatccctaatatgcacccctaaaacaagggtccaccggtggacttatacaaatgacataccacaatcggttgcccttaatttattgtgtaaat |
295 |
Q |
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| T |
51578756 |
gggatccctaatatgcacccctaaaacaagggtccaccggtggacttatacaaatgacataccacaatcggttgcccttaatttattgtgtaaat |
51578850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 49356579 - 49356615
Alignment:
| Q |
206 |
ccctaatatgcacccctaaaacaagggtccaccggtg |
242 |
Q |
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| T |
49356579 |
ccctaatatggacccctaaaacaagggtccaccggtg |
49356615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 14350197 - 14350161
Alignment:
| Q |
206 |
ccctaatatgcacccctaaaacaagggtccaccggtg |
242 |
Q |
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| T |
14350197 |
ccctaatatggacccttaaaacaagggtccaccggtg |
14350161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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