View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18502_low_13 (Length: 292)
Name: NF18502_low_13
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 43907854 - 43907573
Alignment:
| Q |
1 |
tcaatagataaactcaaatgagttaatcaaaataggcctatagtatagattataaaatgagatatggtgtgaaataccgttatggtgtctgttactttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43907854 |
tcaatagataaactcaaatgagttaatcaaaataggcctatagtatagattataaaatgagatacggtgtgaaataccgttatggtgtctgttactttta |
43907755 |
T |
|
| Q |
101 |
tataggttcaggttgatcatggaagaggtggggctgctttcaaattcaacataatttggaacagaatcaacaacatttcttgattgaaagttttcttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43907754 |
tataggttcaggttgatcatggaagaggtggggctgctttcaaattcaacataatttggaacagaatcaacaacatttcttgattgaaagttttcttgaa |
43907655 |
T |
|
| Q |
201 |
acgctcccatctctttattttcgaagtcagaaacttgcggcgattgatgcatagacaatgtttcggaacaatcattttcttc |
282 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43907654 |
acgctcccacctctttattttcgaagtcagaaacttgcggcgattgatgcatagacaatgtttcggaacaatcattttcttc |
43907573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 25487507 - 25487466
Alignment:
| Q |
3 |
aatagataaactcaaatgagttaatcaaaataggcctatagt |
44 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | ||||||| |
|
|
| T |
25487507 |
aatagataaactcaaataagttaatcaaaatatggctatagt |
25487466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University