View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18502_low_14 (Length: 291)
Name: NF18502_low_14
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_low_14 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 45510135 - 45509854
Alignment:
| Q |
10 |
aagaatataactatgaactgcccaaataaaatcatnnnnnnngcatgtaacttgcagtattggtatttagctaatgcttataagaggtaggtaaagaatg |
109 |
Q |
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| T |
45510135 |
aagaatagaactatgaactgcccaaataaaatcataaaaaaagcatgtaacttgcagtattggtatttagctaatgcttataagaggtaggtaaagaatg |
45510036 |
T |
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| Q |
110 |
gtgtcattaccattgttagttgctactaatatataatcagttatcttacagagcctcatcatataagctacacaaaacaaaataaattagtggtttgaac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45510035 |
gtgtcattaccattgttagttgctactaatatataatcagttatcttacagagcctcatcatataagctacacaaaacaaaataaatttgtggtttgaac |
45509936 |
T |
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| Q |
210 |
ttggtcaccagaaggccaatagcacaaaactcaaaagttccaatacatttgacccaaaagaatacaagttcagtctacctat |
291 |
Q |
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| T |
45509935 |
ttgatcaccagaaggccaatagcacaaaactcaaaagttccaatacatttgacccaaaagaatacaagttcagtctacctat |
45509854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 33103909 - 33104187
Alignment:
| Q |
10 |
aagaatataactatgaactgcccaaataaaatcatnnnnnnngcatgtaacttgcagtattggtatttagctaatgcttataagaggtaggtaaagaatg |
109 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
33103909 |
aagaatagaactatgaactgcccaaataaaatcataaaaaa-gcatgtaacttgcagtattggtatttagctaatgcttataagaggcaagtaaagaatg |
33104007 |
T |
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| Q |
110 |
gtgtcattaccattgttagttgctactaatatataatcagttatcttacagagcctcatcatataagctacacaaaacaaaataaattagtggtttgaac |
209 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||| ||||||||||| |
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| T |
33104008 |
ttgtcattaccattgtttgttgctactaatatataatcagttatctcacagaggctcatcatataagctgcac--aacaaaataaatttgtggtttgaac |
33104105 |
T |
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| Q |
210 |
ttggtcaccagaaggccaatagcacaaaactcaaaagttccaatacatttgacccaaaagaatacaagttcagtctacctat |
291 |
Q |
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| T |
33104106 |
ttggtcaccagaaggccaataacctaaaactaaaaagttccgatacatttgacccaaaagaatacaagttcagtctacctat |
33104187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 170 - 291
Target Start/End: Complemental strand, 39707892 - 39707771
Alignment:
| Q |
170 |
atataagctacacaaaacaaaataaattagtggtttgaacttggtcaccagaaggccaatagcacaaaactcaaaagttccaatacatttgacccaaaag |
269 |
Q |
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|||||| |||| |||||||||||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||| ||||||||||| ||||||| |
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| T |
39707892 |
atataatctactcaaaacaaaataaatttgtggtttgaacttggtcaccggaaggccagtagcccaaaactcaaaagttctaatacatttgatccaaaag |
39707793 |
T |
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| Q |
270 |
aatacaagttcagtctacctat |
291 |
Q |
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| T |
39707792 |
aatacaatttcagtctacctat |
39707771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 39707959 - 39707898
Alignment:
| Q |
66 |
gtattggtatttagctaatgcttataagaggtaggtaaagaatggtgtcattaccattgtta |
127 |
Q |
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| T |
39707959 |
gtattggtatttagctaatgcttataagagacgagtaaagaattgtgtgattgccattgtta |
39707898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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