View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18502_low_15 (Length: 248)
Name: NF18502_low_15
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_low_15 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 33104444 - 33104214
Alignment:
| Q |
18 |
ttaatttggttatgttgattgttttgggccttcaggaatttgttcatcttctcagcattatgttccaaagaaattagaacgcttctttcctgaattgttc |
117 |
Q |
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| T |
33104444 |
ttaatttggttatgttgattgttttgggccttcaggaatttgttcatcttctcagcattatgttccaaagaaattagaacgcttctttcctgaattgttc |
33104345 |
T |
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| Q |
118 |
aggctctgtttttgataacttaattcgccttcattactggacattgnnnnnnnaggctcaataataatttattttctagttgagtgtgctttggattttt |
217 |
Q |
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| T |
33104344 |
aggctctgtttttgataacttaattcgccttcattactggacattgtttttttaggctcaataataatttattttctagttgagtgtgctttggattttt |
33104245 |
T |
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| Q |
218 |
gtagaagattcatcatgcatttgactgagat |
248 |
Q |
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| T |
33104244 |
gtagaagattcatcatgcatttgactgagat |
33104214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 33104578 - 33104523
Alignment:
| Q |
82 |
ccaaagaaattagaacgcttctttcctgaattgttcaggctctgtttttgataact |
137 |
Q |
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| T |
33104578 |
ccaaagaaagtagaaggctactttcctgatttgatcaggctctatttttgataact |
33104523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 45509596 - 45509827
Alignment:
| Q |
18 |
ttaatttggttatgttgattgttttgggccttcaggaatttgttcatcttctcagcattatgttccaaagaaattagaacgcttctttcctgaattgttc |
117 |
Q |
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| T |
45509596 |
ttaatttggttatgttgattgttttgggccttcaggaatttgttcatcttctcagcattatgttccaaagaaattagaacgcttctttcctgaattgttc |
45509695 |
T |
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| Q |
118 |
aggctctgtttttgataacttaattcgccttcattactggacattg-nnnnnnnaggctcaataataatttattttctagttgagtgtgctttggatttt |
216 |
Q |
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| T |
45509696 |
aggctctgtttttgataacttaattcgccttcattactggacattgttttttttaggctcaataataatttattttctagttgagtgtgctttggatttt |
45509795 |
T |
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| Q |
217 |
tgtagaagattcatcatgcatttgactgagat |
248 |
Q |
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| T |
45509796 |
tgtagaagattcatcatgcatttgactgagat |
45509827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 39707667 - 39707743
Alignment:
| Q |
171 |
aggctcaataataatttattttctagttgagtgtgctttggatttttgtagaagattcatcatgcatttgactgaga |
247 |
Q |
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| T |
39707667 |
aggctcaataataatatattttctagttgattgtgctttggatttttgtagaagattcatcttgtatttgactgaga |
39707743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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