View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18502_low_18 (Length: 237)
Name: NF18502_low_18
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 38306118 - 38306324
Alignment:
| Q |
1 |
aagagtagaaggaaaaaatttaaggagtgcattgaaaaggttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38306118 |
aagagtagaaggaaaaaatttaaggagtgcgttgaaaaggttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaa |
38306217 |
T |
|
| Q |
101 |
cttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatggtgattatgtctcgtgtctttctgcaaaagagtg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38306218 |
cttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatggtgattatgtctcgtgtccttctgcaaaagagtg |
38306317 |
T |
|
| Q |
201 |
gaaaaga |
207 |
Q |
| |
|
||||||| |
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| T |
38306318 |
gaaaaga |
38306324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38320944 - 38321166
Alignment:
| Q |
1 |
aagagtagaaggaaaaaatttaaggagtgcattgaaaaggttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaa |
100 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38320944 |
aagagtcgaaggcaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaa |
38321043 |
T |
|
| Q |
101 |
cttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatggtgattatgtctcgtgtctttctgcaaaagagtg |
200 |
Q |
| |
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||||||||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||| | |||||| | |||| ||| | | |||| || |
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| T |
38321044 |
cttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatgatgataattatgagttatgtccttcggtagaagaatg |
38321143 |
T |
|
| Q |
201 |
gaaaagaatggaaaagatttgtg |
223 |
Q |
| |
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||||||| | ||||||||||||| |
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| T |
38321144 |
gaaaagagttgaaaagatttgtg |
38321166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 38316854 - 38317014
Alignment:
| Q |
6 |
tagaaggaaaaaatttaaggagtgcattgaaaaggttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaacttat |
105 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||| || ||||| ||||||||||||||| | |||||||||||||| |
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| T |
38316854 |
tagaaggacaaaatttaaggagtgcattgaaaaggttggtggtgttgatagttctgtttgcctgcatctggacatgtctatgagtctgaactcaacttat |
38316953 |
T |
|
| Q |
106 |
ttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatg |
166 |
Q |
| |
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||||||| || |||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
38316954 |
gtgatgcttgaaagtgctcttaaatatcggcatgtatttgaaagttttcacttgtatgatg |
38317014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38313440 - 38313662
Alignment:
| Q |
1 |
aagagtagaaggaaaaaatttaaggagtgcattgaaaaggttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaa |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||||||||||||| |||| ||||| |||||||||||| | || |||||||||| |||||||||| |
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| T |
38313440 |
aagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgcatctagatatgtctatgagagtgaactcaa |
38313539 |
T |
|
| Q |
101 |
cttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatggtgattatgtctcgtgtctttctgcaaaagagtg |
200 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| | || |||||||||| ||||||||||||||| |||||||| || |||| | | ||| |||| || |
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|
| T |
38313540 |
cttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgatgattatgattcatgtcctgcggcagaagactg |
38313639 |
T |
|
| Q |
201 |
gaaaagaatggaaaagatttgtg |
223 |
Q |
| |
|
||||||| | ||||||||||||| |
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|
| T |
38313640 |
gaaaagagtagaaaagatttgtg |
38313662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 38308859 - 38309068
Alignment:
| Q |
14 |
aaaaatttaaggagtgcattgaaaaggttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaacttatttgatgct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||| | ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
38308859 |
aaaaatttaaggagtgcattgaaaaggttggtggtgttgatagttctgttcgtttgcatctagacatgtctatgagagtgaactcaacttatttgatgct |
38308958 |
T |
|
| Q |
114 |
cgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatggtgattatgtctcgtgtctttctgcaaaagagtggaaaagaatggaa |
213 |
Q |
| |
|
| ||||||||||||||||| | || ||||||||| ||||||||||||| | || ||||| || |||| | | ||| |||||||||||||| | ||| |
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| T |
38308959 |
tcaaagtgctcttaaatatcagcttgcatttgaaagtcttcacttgtatgacgatggttatgattcatgtcctgcggcagaagagtggaaaagagtagaa |
38309058 |
T |
|
| Q |
214 |
aagatttgtg |
223 |
Q |
| |
|
|||||||||| |
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|
| T |
38309059 |
aagatttgtg |
38309068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 38325694 - 38325857
Alignment:
| Q |
1 |
aagagtagaaggaaaaaatttaaggagtgcattgaaaaggttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaa |
100 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||||||||||||||| | || ||||| |||||||||||| |||| |||||||| | ||||||||| |
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| T |
38325694 |
aagagtagaagggagaaatttaaggaatgcattgaaaaggttggtggtgtcgatagttccgttcgcttgcatcaggactcgtctatgagtctgaactcaa |
38325793 |
T |
|
| Q |
101 |
cttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatga |
164 |
Q |
| |
|
||||||||||||| || |||||||||||||||| | ||||||||||||| ||||||||||||| |
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|
| T |
38325794 |
cttatttgatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatga |
38325857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38300199 - 38300421
Alignment:
| Q |
1 |
aagagtagaaggaaaaaatttaaggagtgcattgaaaaggttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaa |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||| |||| ||||||||||||| |||| |||| |||||||||||| |||||| | ||| | |||||||||| |
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|
| T |
38300199 |
aagagtggaagggaaaaatttaaggagtgtattgcaaaggttggtggtgttgattgttccgttcgcttgcatctggacacgcctaaaagagtgaactcaa |
38300298 |
T |
|
| Q |
101 |
cttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatggtgattatgtctcgtgtctttctgcaaaagagtg |
200 |
Q |
| |
|
|||||| ||||| || |||||||||||||||| | ||||||||||||| ||||||||||||||| | |||||| | |||| ||| | | ||||||| |
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|
| T |
38300299 |
cttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatgatgatagttatgtgttatgtccttcggtagaagagtg |
38300398 |
T |
|
| Q |
201 |
gaaaagaatggaaaagatttgtg |
223 |
Q |
| |
|
||||||| | |||||||||||| |
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|
| T |
38300399 |
gaaaagagtacaaaagatttgtg |
38300421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38850496 - 38850274
Alignment:
| Q |
1 |
aagagtagaaggaaaaaatttaaggagtgcattgaaaaggttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaa |
100 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| ||||||||||||||||| |||| ||||| |||| ||| ||| |||| || ||||||| | ||| |||| |
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|
| T |
38850496 |
aagagtaggagggaaaaatttaaggagtgctttgaaaaggttggtggtgttgatagttcggttcacttacatttggatatatctatgagtttgagttcaa |
38850397 |
T |
|
| Q |
101 |
cttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatggtgattatgtctcgtgtctttctgcaaaagagtg |
200 |
Q |
| |
|
||||| || |||| || || ||||||||||| | || |||||||||||||||||||||||||| | ||||| | |||| ||| || ||||||| |
|
|
| T |
38850396 |
cttatatgttgcttgaaagagctcttaaataccggtgtgcgtttgaaagttttcacttgtatgatgatagttatgatttatgtccttcggcggaagagtg |
38850297 |
T |
|
| Q |
201 |
gaaaagaatggaaaagatttgtg |
223 |
Q |
| |
|
||||||| | ||||||||||||| |
|
|
| T |
38850296 |
gaaaagagtagaaaagatttgtg |
38850274 |
T |
|
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