View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18502_low_2 (Length: 585)
Name: NF18502_low_2
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 2350648 - 2350327
Alignment:
| Q |
8 |
cgaagaatatatgattttattttttattcaaataatattgtctcgaaatctccaaattgcttttcgataacccctattttagagaagtacatttgttttg |
107 |
Q |
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| T |
2350648 |
cgaacaatatatgattttattttttattcaaataatattgtctcgaaatctccaaattgcttttcgataacccctattttagagaagtacatttgttttg |
2350549 |
T |
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| Q |
108 |
aaacagtacataaatatttctcttgatgnnnnnnncgtgtgaaccaaatannnnnnnngcataactacagacactaatcatttgagttgtgtaaaaacac |
207 |
Q |
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| T |
2350548 |
taacagtacataaatatttctcttgatgtttttttcgtgtgaactgaatattttttttgcataactgcagacactaataatttgagttgtgtaaaaacac |
2350449 |
T |
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| Q |
208 |
aatagatttaatattgttattttctcaaatttaaattcaaatcctgggcctctaaccaagcagaaagagatttttccctatttcattcaaattatcttgg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2350448 |
aatagatttaatattgttattttctcaaatttaaattcaaatcttgggcccctaaccaagcagaaagagatatttccctatttcattcaaattatcttgg |
2350349 |
T |
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| Q |
308 |
cttaatgtttctctagttagtt |
329 |
Q |
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| T |
2350348 |
cttaatgtttctcttgttagtt |
2350327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 325 - 570
Target Start/End: Complemental strand, 2350301 - 2350048
Alignment:
| Q |
325 |
tagttgagatttgagagggagaaaatgcatatctgtctgcggtttgtctaagcttgcgttaaatgaaaaagtagcatcaaaattctaannnnnnnnnnnn |
424 |
Q |
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| T |
2350301 |
tagttgagatttgagagggagaaagtgcatatctgttggcggtttgtctaagctggcgttaaatgaaaaagtagcatcaaaattctaattttttttttct |
2350202 |
T |
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| Q |
425 |
----caatgagtcaacgaccaccacatccacattttattatgcatggcattatatatat----gaatcaatgtgatttctaccaaagttgcgggaacaac |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
2350201 |
ttttcaatgagtcaacgaccaccacatccacattttattatgcatggcattatatatatatatgaatcaatgtgatttctaccaaacttgcgggaacaac |
2350102 |
T |
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| Q |
517 |
ggagaaatgcaactcccatttgcatttctccatgcaacaacgttatgaaacaaa |
570 |
Q |
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| T |
2350101 |
ggagaaatgcaacccccatttgcatttctccatgcaacaacgttatgaaacaaa |
2350048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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