View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18502_low_4 (Length: 511)
Name: NF18502_low_4
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 8 - 511
Target Start/End: Complemental strand, 40049108 - 40048593
Alignment:
| Q |
8 |
cgaagaatatcacaagccaatttttgtccnnnnnnngtttatcttacaggtcagttatacattttctataacctctatactgttgattccaactacattt |
107 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40049108 |
cgaataatatcacaagccaatttttgtccaaaaaaagtttatcttacaggtcagttatacattttctataacctctatactgttgattccaactacattt |
40049009 |
T |
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| Q |
108 |
attgcaatatgatttgagaaacaataatattaatctcatttcaaagttaacggctcaccacataaaaacttcacacaataattcaagtaaccaaaagaga |
207 |
Q |
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| T |
40049008 |
attgcaatatgatttgagaaacaataatattaatctcatttcaaagttaacgggtcaccacataaaaacttcacacgataattcaagtaaccaaaagaga |
40048909 |
T |
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| Q |
208 |
tgcaatgccaataataataa------------gataaaatatccttattcaccatgacagattattgattccaccaaaatcacaactatagaactataac |
295 |
Q |
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| T |
40048908 |
tgcaataccaataataataataataataataagataaaatatccttattcaccatgacagattattgattccaccaaaatcacaactatagaactataac |
40048809 |
T |
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| Q |
296 |
attacacctacccatcatttcattggtctctatataaaaccacctctcattactctccaatcaacacatccaacatacaaattaacaaaaaatccaatca |
395 |
Q |
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||||||||||||||||||||| |||| ||| ||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048808 |
attacacctacccatcatttccttggcctcaatataaatccacctctccttgccatccaatcaacacatccaacatacaaattaacaaaaaatccaatca |
40048709 |
T |
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| Q |
396 |
tttacgttcctccacaatcttcaatcatcaagccaaatatgaatcaaattatcttttccttctcactctttctactcatgttctcctcattgtattctcc |
495 |
Q |
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| T |
40048708 |
tttacattcctccacaatcttcaatcatcaagccaaatatgaatcaaattatcttttccttctcactctttctactcatgttctcctcattgtattctcc |
40048609 |
T |
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| Q |
496 |
caacacagcagcaaca |
511 |
Q |
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| T |
40048608 |
caacatagcagcaaca |
40048593 |
T |
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