View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18502_low_5 (Length: 476)
Name: NF18502_low_5
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 259 - 459
Target Start/End: Original strand, 35810892 - 35811085
Alignment:
| Q |
259 |
ctcatttgcttttctgcatgtaggcaaagaaaatgtttccaaccgaaatctctgctattataaggtatctcaatctatggcttctaaactgttaataatt |
358 |
Q |
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| T |
35810892 |
ctcatttacttttctgcatgtaggcaaagaaaatatttccaaccggcatcagtgctattataaggtatctcaatctgtggc----aaactgtttataatt |
35810987 |
T |
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| Q |
359 |
tgtggttgaaactgctaattgttctttgattcggcctgttggcttcgagactattctgattttgatctgactcctttataaatgcgatgtttgcagctct |
458 |
Q |
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| T |
35810988 |
tgtgtttgaaactgctaatttttcttttattcggcctgttgcctttgagactattctgattttgatctgactcc---atatatgcgttgtttgcagctct |
35811084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 12872981 - 12873087
Alignment:
| Q |
20 |
attacttagattaatctggtaacaattagtttttcttaatatacttgaattttgagtt-tattaattctatttttcaagtttgcattgtaaccttaagtt |
118 |
Q |
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| T |
12872981 |
attacttagattaatttggtaacaattagattctcttaatatacttgaattttgagttctattatttctatttttcaagtttgcattgtaaccttaagtt |
12873080 |
T |
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| Q |
119 |
ccgaaac |
125 |
Q |
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| T |
12873081 |
ccgaaac |
12873087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 27770132 - 27770238
Alignment:
| Q |
20 |
attacttagattaatctggtaacaattagtttttcttaatatacttgaattttgagtt-tattaattctatttttcaagtttgcattgtaaccttaagtt |
118 |
Q |
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||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27770132 |
attacttagattaatttggtcacaattagattctcttaatatacttgaattttgagttctattatttctatttttcaagtttgcattgtaaccttaagtt |
27770231 |
T |
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| Q |
119 |
ccgaaac |
125 |
Q |
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||||||| |
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| T |
27770232 |
ccgaaac |
27770238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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