View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18502_low_6 (Length: 428)
Name: NF18502_low_6
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 51301982 - 51302393
Alignment:
| Q |
1 |
ttgataaaatatcataattttacaaccaaacgaggaattaatacaaaacgcagtcattaggtatnnnnnnnnnnnnntaacaaaagcgtcatagagcaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
51301982 |
ttgataaaatatcataattttacaaccaaacgaggaattaataccaaacgcagtcatttggtataaaaaagaaaaa-taacaaaagcgtcatagagcaac |
51302080 |
T |
|
| Q |
101 |
ttatacttatattaaaaccacactcaagcatgagatgtgctaggatggaacaaagaggcaagctggacacagaacagataaaaaccaagaacaaatcccc |
200 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51302081 |
ttatacttgtattaaaaccaaactcaagcatgagatgtgctaggatggaacaaagaggcaagctggacacagaacagataaaaaccaagaacaaatcccc |
51302180 |
T |
|
| Q |
201 |
aaggcaagcaaaatatccagcagtagcacacaacacaaagcactgcttgaacatgctaaaaatgcacctaactccttcgcaccaaactcatacaaccaaa |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51302181 |
aaggcaagcaaaatatccagcagtagcacacaacacaaagcactgcttgaacatgctaaaaatgcacctaactccttcgcaacaaactcatacaaccaaa |
51302280 |
T |
|
| Q |
301 |
g-aaagcctcccaccagaataactaacagacttcaccaaaacttgaaacagcgagaaattctccactttaaaacttgatttcaagcttcaagactattca |
399 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51302281 |
gaaaagcctcccaccagaataactaacagacttcaccaaaacttgaaacagcaagaaattctccactttaaaacttgatttcaagcttcaagactattca |
51302380 |
T |
|
| Q |
400 |
aaaataaaaactc |
412 |
Q |
| |
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||||||||||||| |
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| T |
51302381 |
aaaataaaaactc |
51302393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 155 - 390
Target Start/End: Original strand, 44113227 - 44113453
Alignment:
| Q |
155 |
gaggcaagctggacacagaacagataaaaaccaagaacaaatccccaaggcaagcaaaatatccagcagtagcacacaacacaaagcactgcttgaacat |
254 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| |||||||||||||||||| ||| | |||||||| |
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| T |
44113227 |
gaggcaagctggacacagaacagacaaaa-ccaagaacaaatcccca---caagcaaaatttccagcagtagcacacaa------gcaatacttgaacag |
44113316 |
T |
|
| Q |
255 |
gctaaaaatgcacctaactccttcgcaccaaactcatacaaccaaagaaa-gcctcccaccagaataactaacagacttcaccaaaacttgaaacagcga |
353 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
44113317 |
gctaaaaatgtacctaactccttcgcacctaactcatacaaccaaagaaaagcctcccaccagaataactaacagacttcaccaaaacttgaaatagtaa |
44113416 |
T |
|
| Q |
354 |
gaaattctccactttaaaacttgatttcaagcttcaa |
390 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| |
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|
| T |
44113417 |
gaaattctccactttcaaactctatttcaagcttcaa |
44113453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 44113061 - 44113124
Alignment:
| Q |
1 |
ttgataaaatatcataatttt-acaaccaaacgaggaattaatacaaaacgcagtcattaggta |
63 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||| ||| ||||||||| |||| |
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|
| T |
44113061 |
ttgataaaatatcataatttttacaaccaaatgaggaattaatactaaaagcagtcatttggta |
44113124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 44113157 - 44113199
Alignment:
| Q |
105 |
acttatattaaaaccacactcaagcatgagatgtgctaggatg |
147 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| |||||||| |
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|
| T |
44113157 |
acttatattaaaaccacactcatgcacgagatgtactaggatg |
44113199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 50016238 - 50016308
Alignment:
| Q |
320 |
aactaacagacttcaccaaaacttgaaacagcgagaaattctccactttaaaacttgatttcaagcttcaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||| ||||| |||||||||||||| |
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|
| T |
50016238 |
aactaacagacttcaccaaaacttgaaatagtaagaaattctccactttcaaactcaatttcaagcttcaa |
50016308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 409
Target Start/End: Original strand, 18843337 - 18843376
Alignment:
| Q |
370 |
aaacttgatttcaagcttcaagactattcaaaaataaaaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18843337 |
aaacttgatttcaagcttcaagactattcaaaaataaaaa |
18843376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 409
Target Start/End: Original strand, 18854805 - 18854844
Alignment:
| Q |
370 |
aaacttgatttcaagcttcaagactattcaaaaataaaaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18854805 |
aaacttgatttcaagcttcaagactattcaaaaataaaaa |
18854844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 50016004 - 50016047
Alignment:
| Q |
1 |
ttgataaaatatcataattttacaaccaaacgaggaattaatac |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50016004 |
ttgataaaatatcataattttacaaccaaatgaggaattaatac |
50016047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 18843181 - 18843221
Alignment:
| Q |
4 |
ataaaatatcataattttacaaccaaacgaggaattaatac |
44 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||| |
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|
| T |
18843181 |
ataaaatatcataattttacaaccagacaaggaattaatac |
18843221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 18854649 - 18854689
Alignment:
| Q |
4 |
ataaaatatcataattttacaaccaaacgaggaattaatac |
44 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||| |
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|
| T |
18854649 |
ataaaatatcataattttacaaccagacaaggaattaatac |
18854689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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