View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18502_low_8 (Length: 401)
Name: NF18502_low_8
Description: NF18502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18502_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 37859498 - 37859136
Alignment:
| Q |
18 |
acgttcctcatcaatgctaagtgaaaagagcttagaaatgtgcactgaaagccttgggagtgaaactggtagcaatgctggtgaaagtagtgatattgat |
117 |
Q |
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| T |
37859498 |
acgttcctcatcaatgctaagtgaaaagagcttagaaatgtgcactgaaagccttgggagtgaaactggtagcaatgctggtgaaagtagtgatattgat |
37859399 |
T |
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| Q |
118 |
gtttcattattttcttctgacacaagaaatgatgttaacaataacaacatgaataattgtgtgtctagaagagttaataaagcttcttgtaactttcctc |
217 |
Q |
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| T |
37859398 |
gtttcattattttcttctgacacaagaaatgatgttaacaataacaacatgaataattgtgtgtctagaagagttaataaagcttcttgtaactttcctc |
37859299 |
T |
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| Q |
218 |
caccactcacatcaataactgattttggtggtgttcatgttaggcctcatcgcgaaggtggtaggttgatattagaagctattgcttctccttctactac |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37859298 |
caccactcacttcaataactgattttggtggtgttcatgttaggcctcatcgcgaaggtggtaggttgatattagaagctattgcttctccttctactac |
37859199 |
T |
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| Q |
318 |
tccttatttccatgcagaacgtgttgatggtaggcttaggttgagtatttttgagactgtttt |
380 |
Q |
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| T |
37859198 |
tccttatttccatgcagaacgtgttgatggtaggcttaggttgagtatttttgagactgtttt |
37859136 |
T |
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