View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_high_13 (Length: 308)
Name: NF18503_high_13
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 31264106 - 31263816
Alignment:
| Q |
1 |
tcaatcaaaccctcaaatattgttaggactatctcctcaaaccttcatctattgtaccatttcatctatcattctatctaattgttctacattggttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264106 |
tcaatcaaaccctcaaatattgttaggactatctcctcaaaccttcatctattgtaccatttcatctatcattctatctaattgttctacattggttttt |
31264007 |
T |
|
| Q |
101 |
atatttcctcatgcatctgtttatactattgtcatcgttaatcaattgtatagatcatatcgcaattaagcgtaaacaataattgttgaaaatttattaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31264006 |
atatttcctcatgcatctgtttatactattgtcatcgttaatcaattgtatagatcatatcgcaattaagcgtaaacaataattgttgaaaatttattaa |
31263907 |
T |
|
| Q |
201 |
gttgcattaatattattaaagttttctattgtatcaccgtcttaactttaatgttgtgtggtcatcaaaactactgatgaataatttttca |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31263906 |
gttgcattaatattattaaagttttctattgtatcaccgtcttaactttaatgttgtgtggtcatcaaaactactgatgaataatttttca |
31263816 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 12212505 - 12212406
Alignment:
| Q |
18 |
tattgttaggactatctcc-tcaaaccttcatctattgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcat |
116 |
Q |
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||||||||||||||||||| | ||||| ||| ||||||||||||||| ||||| ||||| ||||| |||||| ||||||||||||||||||||| ||| |
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| T |
12212505 |
tattgttaggactatctccattaaacca-catgtattgtaccatttcaactatccatctatataattattctaccttggtttttatatttcctcatccat |
12212407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 13815086 - 13815186
Alignment:
| Q |
18 |
tattgttaggactatctcc-tcaaaccttcatctattgtaccatttcatctatcattctatctaattgttctacattggttt-ttatatttcctcatgca |
115 |
Q |
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||||||||||||||||||| | ||||| ||| ||||||||||||||| ||||| ||||| ||| |||||||| ||||||| |||||||||||||| || |
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| T |
13815086 |
tattgttaggactatctccattaaacca-catgtattgtaccatttcaactatccatctatataaatgttctaccttggtttgttatatttcctcatcca |
13815184 |
T |
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| Q |
116 |
tc |
117 |
Q |
| |
|
|| |
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|
| T |
13815185 |
tc |
13815186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 15852247 - 15852342
Alignment:
| Q |
37 |
tcaaaccttcatctattgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcatctgtttatactattgt |
132 |
Q |
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||||||| ||| ||||||||||||||| ||||| | ||| |||||||||||| |||||||||||||||| |||| |||| |||||||| ||||| |
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| T |
15852247 |
tcaaacccacatgtattgtaccatttcaactatccatgtatataattgttctaccttggtttttatatttcatcatccatccgtttataccattgt |
15852342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 15852351 - 15852407
Alignment:
| Q |
207 |
ttaatattattaaagttttctattgtatcaccgtcttaactttaatgttgtgtggtc |
263 |
Q |
| |
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|||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
15852351 |
ttaacattattaaatttttctattgtatgatagtcttaactttaatgttgtgtggtc |
15852407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 22144688 - 22144589
Alignment:
| Q |
18 |
tattgttaggactatctcc-tcaaaccttcatctattgtaccatttcatctatcattctatctaattgttctacattggtttttatatttcctcatgcat |
116 |
Q |
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||||||||||||||||||| | ||||| ||| ||||||||||||||| ||||| ||||| |||||||||||| || |||| ||||| ||||||| ||| |
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| T |
22144688 |
tattgttaggactatctccattaaacca-catgtattgtaccatttcaactatccatctatataattgttctaccttagtttatatatgtcctcatccat |
22144590 |
T |
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