View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_high_18 (Length: 286)
Name: NF18503_high_18
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 46709646 - 46709916
Alignment:
| Q |
1 |
ataattcacaaaggtttgttnnnnnnnntataattcgcaaaggatcttttatgaatagtcagttatgttgtttagccaaatatttcgtagatatactagt |
100 |
Q |
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| T |
46709646 |
ataattcacaaaggtttgttaaaaaaaatataattcgcaaaggatcttttatgaatagtcagttatgttgtttagccaaatatttcgtagatatactagt |
46709745 |
T |
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| Q |
101 |
gatggtctatttggtctttgactgtgtggtctgtttacctcttgacaagatctactggcagtgcttgttcggggaaagtccaatccttataaagcgcgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46709746 |
gatggtctatttggtctttgactgtgtggtctgtttacctcttgacaagatctactggcagtgcttgttcggggaaagtccaatccttataaagcgcgga |
46709845 |
T |
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| Q |
201 |
tgacaactccatggcatacttggaaggatacactgtggcctctaaaaggccacctgcattgatgaggattt |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46709846 |
tgacaactccatggcatacttggaaggatacactgtggcctctaaaaggccacctgcattgatgaggattt |
46709916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 36925901 - 36925823
Alignment:
| Q |
134 |
tttacctcttgacaagatctactggcagtgcttgttcggggaaagtccaatccttataaagcgcggatgacaactccat |
212 |
Q |
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|||||||||||| ||||||| | |||||||||||||| ||||||| ||||||||||||||| |||||| |||||||| |
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| T |
36925901 |
tttacctcttgagaagatcttcaggcagtgcttgttcagggaaagaccaatccttataaagaaaggatgaaaactccat |
36925823 |
T |
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