View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_high_22 (Length: 249)
Name: NF18503_high_22
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45103775 - 45103536
Alignment:
| Q |
1 |
acatcaaccatttcctattgtaataatgacagttagttaaaaagttaaaacaaggtttatgagaaaatataaatgatacataacannnnnnnnn-gttga |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45103775 |
acatcaaccatttcctattgtaataatgacagttagttaaaaagttaaaacaaggtttatgagaaaatataaatgatacataacattttttttttgttga |
45103676 |
T |
|
| Q |
100 |
tcataatgatttacgatttatnnnnnnncataaagtataacttatgagaaataattatatgtgtagctagtgttattaccgaatgaagaggccaattttc |
199 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45103675 |
tcataatgatttaggatttataaaaaaacataaagtataacttatgagaaataattatatgtgtagctagtgttattaccgaatgaagaggccaattttc |
45103576 |
T |
|
| Q |
200 |
ccatgtttgctccatcagaagaaaatgtgttctgttctgt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
45103575 |
ccatgtttgctccatcagaagaaaatgtgttctgttctgt |
45103536 |
T |
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