View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18503_high_28 (Length: 236)
Name: NF18503_high_28
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 19118474 - 19118696
Alignment:
| Q |
1 |
tcatagctatgagtgcagtcaacacatgagactttaccctgaacaatttcacaagctgataggtcaattctaacaagaactaatgcaaagagaagagctg |
100 |
Q |
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| T |
19118474 |
tcatagctatgagtgcagtcaacacatgagactttaccctgaagaatttcacatgctgataggtcaattctaactaaaactaatgcaaagagaagagctg |
19118573 |
T |
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| Q |
101 |
tgataacatgaacatatgccatgagcaatgaaacagtaaaaagctgataa--agaacaatgaaattgaagagaaggtgataagtgtgaagcttataatat |
198 |
Q |
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| T |
19118574 |
tgataacatgaacatatgccatgagcaatgaaacaggaaaaagctgataaacaaaactatgaaattgaagagaaagtaataagtgtgaagcttataatat |
19118673 |
T |
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| Q |
199 |
agaggaagcaatagagtgaatgt |
221 |
Q |
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| T |
19118674 |
agaggcagcaatagagtgaatgt |
19118696 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 36446780 - 36446728
Alignment:
| Q |
62 |
ggtcaattctaacaagaactaatgcaaagagaagagctgtgataacatgaaca |
114 |
Q |
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| T |
36446780 |
ggtcaattcttgcaagagctaatgcaaaaagaagtgttgtgataacatgaaca |
36446728 |
T |
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