View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18503_high_30 (Length: 233)
Name: NF18503_high_30
Description: NF18503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18503_high_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 7570819 - 7570613
Alignment:
| Q |
14 |
aatatagcaatatttgataaatcttcatatttttaacttcctttccctttgatttaatcactcttgttcctttgtatatgcatacagcttcaaaaagcgt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7570819 |
aatatagcaatatttgataaatcttcatatttttaacttcctttccctttgatttaatcactcttgttcctttgtatatgcatacagcttcaaaaagcgt |
7570720 |
T |
|
| Q |
114 |
aacagagatagcaataggaacctagaattggaaaatcttatatatgtcattaaacaattctaaaactaaacatgtgcttgataaggatattcaaatatgt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7570719 |
aacagagatagcaataggaacctagaattggaaaatcatatatatgtcattaaacaattctaaaactaaacatgtgcttgataagaatattcaaatatgt |
7570620 |
T |
|
| Q |
214 |
tagaaat |
220 |
Q |
| |
|
||||||| |
|
|
| T |
7570619 |
tagaaat |
7570613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 33124234 - 33124319
Alignment:
| Q |
51 |
ttcctttccctttgatttaatcactcttgttcctttgtatatgcatacagcttcaaaaagcgtaacagagatagcaataggaacct |
136 |
Q |
| |
|
|||||||||| ||||| ||| ||||| ||||||||| ||| ||||| ||||||||||| |||||||| || |||||||| |||| |
|
|
| T |
33124234 |
ttcctttccccttgatgcaattactctagttcctttgcataagcatatggcttcaaaaagtgtaacagaaattgcaataggcacct |
33124319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University